View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_22 (Length: 358)
Name: NF9288_low_22
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 342
Target Start/End: Original strand, 40803200 - 40803534
Alignment:
| Q |
8 |
tggtgttcagacaatcgctgtttgaagtcactgcatcaaaagttgaagaagtcaccggttagaaaacttgcagcaagcacaaaaaagcattaatgtcaac |
107 |
Q |
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| T |
40803200 |
tggtgttcagacaatcgctgtttgaagtcactgcatcaaaagttgaagaagtcaccggttagaaaacttgcagcaagcacaaaaaagcattaatgtcaac |
40803299 |
T |
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| Q |
108 |
attttccccgtattttccatgtcatgttccccctttacaccattcatcaatttcaagtttccataggtaaaagatactaaaaaataagatgttgcatgat |
207 |
Q |
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| T |
40803300 |
attttccccgtattttccatgtcatgttccccctttacaccattcatcaatttcaagtttccataggtaaaagatactaaaaaataagatgttgcatgat |
40803399 |
T |
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| Q |
208 |
ataaaacaacatcaatcacaaggcaaataaaattagttattgcaatattatttaatatgcagaagttaatttcaatttatattctttaaaccagaaaatt |
307 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40803400 |
ataaaataacatcaatcacaaggcaaataaaattagttattgcaatattatttaatatgcagaagttaatttcaatttatattctttaaaccagaaaatt |
40803499 |
T |
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| Q |
308 |
tgtgtttggtttatgtacttactgatggttggtaa |
342 |
Q |
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| T |
40803500 |
tgtgtttggtttatgtacttactgatggttggtaa |
40803534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 52516659 - 52516699
Alignment:
| Q |
302 |
aaaatttgtgtttggtttatgtacttactgatggttggtaa |
342 |
Q |
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| T |
52516659 |
aaaatttgtgtttggtttatgtacttactgatggttggtaa |
52516699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 41031976 - 41031936
Alignment:
| Q |
302 |
aaaatttgtgtttggtttatgtacttactgatggttggtaa |
342 |
Q |
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| T |
41031976 |
aaaatttgtgtttggtttatgtacttactgatggttggtaa |
41031936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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