View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_23 (Length: 357)
Name: NF9288_low_23
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 155 - 349
Target Start/End: Original strand, 48248437 - 48248640
Alignment:
| Q |
155 |
gtcttcattttctcacaaaaacaagagatctgatacaacctcaccacactattatttctgttttcaaaatcgaa----------cattcatagcccacct |
244 |
Q |
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| T |
48248437 |
gtcttcattttctcacaaaaacaagagatctgatacaacctcaccacactattatttccgttttcaaaatcgaatgttgtcgtacattcatagcccacct |
48248536 |
T |
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| Q |
245 |
tcatcattgctagtcacaagtattagatttcgcccaaaatatcgcaggtgagtgaaggctacgtttgtgaagggtctatctttattatgtctcggttgac |
344 |
Q |
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| T |
48248537 |
tcatcattgctagtcacaagtattagatttcgcccagaatattgcaggtgagtgagggctacgtttgtgaa-ggtctatctttattatgtctcggttgac |
48248635 |
T |
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| Q |
345 |
cacca |
349 |
Q |
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||||| |
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| T |
48248636 |
cacca |
48248640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 48248312 - 48248410
Alignment:
| Q |
18 |
ctatggacagctgctttgacagtcgccatttaacactcgcttctacattggtacacgttatccctcattgcccggctacctgcttatatagtttaatca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48248312 |
ctatggacagctgctttgacagtcgccatttaacactcgcttctacattggtacacgttatccctcattgcccggctacctgcttatatagtttaatca |
48248410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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