View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_28 (Length: 351)
Name: NF9288_low_28
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 7447154 - 7447498
Alignment:
| Q |
1 |
atatgatgatcacgtatttttcatggctaatgaaacatgttactacaatggcatggaatggataagtttgtact---------------aattaagaata |
85 |
Q |
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| T |
7447154 |
atatgatgacgacgtatttttcatgcccaatgaaacatgttactacaatggcatggaatggataagtttgtacatgtagaagaaaaaaaaaaaaagaata |
7447253 |
T |
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| Q |
86 |
tattagtaataataatattgcatttgtacataatgtgaatgatcccaatatgtaaattaattgtttgctattagctagtgtgtttatttaactatgattt |
185 |
Q |
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| T |
7447254 |
tattagtaataata---tagcatttgtacataatgtgaatgatcccaatatgtaaattaattgtttgctactagctagtgtgtttatttaactatgattt |
7447350 |
T |
|
| Q |
186 |
gggaacatatatatccattaacataatgattttcattttgactccaaatcgtatggtatccactactttagtttttgtcaccttctataagatgtatata |
285 |
Q |
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| T |
7447351 |
gggaacatatatatccattaacataatgattttcattttgactccaaatggtatggtatccactactttagtttttgtcaccttctataagatgtatata |
7447450 |
T |
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| Q |
286 |
ttcatgtgtcgtgtgttttaagctcatcaaattatcaatgctatattt |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7447451 |
ttcatgtgtcgtgtgttttaagctcatcaaattatcaatgctatattt |
7447498 |
T |
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