View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288_low_29 (Length: 346)

Name: NF9288_low_29
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288_low_29
NF9288_low_29
[»] chr1 (2 HSPs)
chr1 (1-342)||(28843409-28843739)
chr1 (233-262)||(30602335-30602364)
[»] chr3 (1 HSPs)
chr3 (236-326)||(22312204-22312295)
[»] chr4 (5 HSPs)
chr4 (295-337)||(34542407-34542449)
chr4 (228-262)||(25050079-25050113)
chr4 (234-262)||(18523317-18523345)
chr4 (234-270)||(36165558-36165594)
chr4 (234-262)||(41389526-41389554)
[»] chr7 (3 HSPs)
chr7 (281-326)||(31260835-31260880)
chr7 (234-262)||(5473272-5473300)
chr7 (234-270)||(33804213-33804249)
[»] scaffold0557 (1 HSPs)
scaffold0557 (234-262)||(4632-4660)
[»] chr5 (1 HSPs)
chr5 (234-262)||(31540330-31540358)


Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 28843739 - 28843409
Alignment:
Q  1 gaacagagggaacaatcagctttaaagcatgctaaagatcaactttctcataacaattgacacttattgaacaatgaactgattgggggcatgttatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28843739 gaacagagggaacaatcagctttaaagcatgctaaagatcaactttctcataacaattgacacttattgaacaatgaactgattgggtgcatgttatttt 28843640  T
Q  101 cctcattcctcatcttgatcacaacatatgcaacctgtatgacaaaaaacgaccaatcggccatatgttcaaaatcaaagaggtgaacatgcacaacttt 200  Q
    || |||       |||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||| ||||||||||||||||||||||    
T  28843639 ccacat-------cttgatcacaacatatgcaacctgtatgacaaaaaacga------ggccatatgttcaaaatcacagaggtgaacatgcacaacttt 28843553  T
Q  201 gtttattgcttcacaatggaacaaaggtgaaattgttgaagttggttttgaagttgtttgtaattcg--tttagtttcacaatgctcaagttttcggacc 298  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || |  ||||||||||||  |||||||||||||||||    
T  28843552 gtttattgcttcacgatggaacaaaggtgaaattgttgaagttgattttgaagttgtttgtagtttgtttttagtttcacatcgctcaagttttcggacc 28843453  T
Q  299 gttgagtgtataaatatgcttgagtatcattatcctttgcttct 342  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  28843452 gttgagtgtataaatatgcttgagtatcattatcctttgtttct 28843409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 262
Target Start/End: Original strand, 30602335 - 30602364
Alignment:
Q  233 ttgttgaagttggttttgaagttgtttgta 262  Q
    ||||||||||||||||||||||||||||||    
T  30602335 ttgttgaagttggttttgaagttgtttgta 30602364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 326
Target Start/End: Original strand, 22312204 - 22312295
Alignment:
Q  236 ttgaagttggttttgaagttgtttgtaattcgt--ttagtttcacaatgctcaagttttcggaccgttgagtgtataaatatgcttgagtatc 326  Q
    ||||||||||||||||||||||||||| || ||  ||||| ||||||||||| |||||   ||| ||||||| |||||||||| |||||||||    
T  22312204 ttgaagttggttttgaagttgtttgtagtttgttattagtctcacaatgctc-agtttcttgactgttgagtatataaatatgtttgagtatc 22312295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 337
Target Start/End: Complemental strand, 34542449 - 34542407
Alignment:
Q  295 gaccgttgagtgtataaatatgcttgagtatcattatcctttg 337  Q
    |||||||||||||||||||||| ||||||||||| ||||||||    
T  34542449 gaccgttgagtgtataaatatgtttgagtatcatcatcctttg 34542407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 262
Target Start/End: Original strand, 25050079 - 25050113
Alignment:
Q  228 tgaaattgttgaagttggttttgaagttgtttgta 262  Q
    |||| ||||||||||||||||||||||||||||||    
T  25050079 tgaatttgttgaagttggttttgaagttgtttgta 25050113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Complemental strand, 18523345 - 18523317
Alignment:
Q  234 tgttgaagttggttttgaagttgtttgta 262  Q
    |||||||||||||||||||||||||||||    
T  18523345 tgttgaagttggttttgaagttgtttgta 18523317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 36165594 - 36165558
Alignment:
Q  234 tgttgaagttggttttgaagttgtttgtaattcgttt 270  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  36165594 tgttgaagttagttttgaagttgtttgtaatttgttt 36165558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Complemental strand, 41389554 - 41389526
Alignment:
Q  234 tgttgaagttggttttgaagttgtttgta 262  Q
    |||||||||||||||||||||||||||||    
T  41389554 tgttgaagttggttttgaagttgtttgta 41389526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 326
Target Start/End: Complemental strand, 31260880 - 31260835
Alignment:
Q  281 tgctcaagttttcggaccgttgagtgtataaatatgcttgagtatc 326  Q
    |||||||||| |||||||||||||| |||||||||| |||| ||||    
T  31260880 tgctcaagttctcggaccgttgagtttataaatatgtttgaatatc 31260835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Original strand, 5473272 - 5473300
Alignment:
Q  234 tgttgaagttggttttgaagttgtttgta 262  Q
    |||||||||||||||||||||||||||||    
T  5473272 tgttgaagttggttttgaagttgtttgta 5473300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 33804249 - 33804213
Alignment:
Q  234 tgttgaagttggttttgaagttgtttgtaattcgttt 270  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  33804249 tgttggagttggttttgaagttgtttgtagttcgttt 33804213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Original strand, 4632 - 4660
Alignment:
Q  234 tgttgaagttggttttgaagttgtttgta 262  Q
    |||||||||||||||||||||||||||||    
T  4632 tgttgaagttggttttgaagttgtttgta 4660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 262
Target Start/End: Complemental strand, 31540358 - 31540330
Alignment:
Q  234 tgttgaagttggttttgaagttgtttgta 262  Q
    |||||||||||||||||||||||||||||    
T  31540358 tgttgaagttggttttgaagttgtttgta 31540330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University