View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288_low_3 (Length: 545)

Name: NF9288_low_3
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288_low_3
NF9288_low_3
[»] chr3 (2 HSPs)
chr3 (19-473)||(49995590-49996044)
chr3 (137-181)||(8247541-8247585)
[»] chr7 (1 HSPs)
chr7 (138-188)||(7139752-7139802)
[»] chr5 (3 HSPs)
chr5 (148-198)||(19045555-19045605)
chr5 (137-183)||(28173086-28173132)
chr5 (137-169)||(28575807-28575839)
[»] chr6 (1 HSPs)
chr6 (138-166)||(23918352-23918380)
[»] chr4 (1 HSPs)
chr4 (137-185)||(6424204-6424252)
[»] chr2 (2 HSPs)
chr2 (137-185)||(35198232-35198280)
chr2 (137-185)||(42043198-42043246)


Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 19 - 473
Target Start/End: Original strand, 49995590 - 49996044
Alignment:
Q  19 gaatgccatcagaagctgcaatcataatcattgttagcactaacttcatccaaatgacctctgtagcaacggcacttatgatggaaagcgtgtacgatgt 118  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  49995590 gaatgccatcagaagctgcaatcataatcattgttagcaataacttcatccaaatgacctctgtagcaatggcacttatgatggaaagcgtgtacaatgt 49995689  T
Q  119 ttgatacatataggtgtggacaccgacacatgtaattgcattcaattaattcaattttttaaattatcactgatgtcgatttcttagtgtcgtgtccggt 218  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  49995690 ttgatacatataggtgtggacaccgacacatgtaattacattcaattaattcaattttttaaattatcactgatgtcgatttcttagtgccgtgtccggt 49995789  T
Q  219 gtccgagtatgtgattgatagcaaataacttataactactctatcaattttataaaaaatcaggtttacacacaacaaatacagtccattggagacaaat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49995790 gtccgagtatgtgattgatagcaaataacttataactactctatcaattttataaaaaatcaggtttacacacaacaaatacagtccattggagacaaat 49995889  T
Q  319 accttgtactctatttgggaggaactactgaggttgaatatcctttccacctaaaatatgaatattacaatgttaacaccaatatcaagtggcttataaa 418  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49995890 accttgtactctatttgggaggaactactgaggttgaataccctttccacctaaaatatgaatattacaatgttaacaccaatatcaagtggcttataaa 49995989  T
Q  419 ataaaatctcatctttacaccttaaatacactttagcattaaactaaatagaact 473  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  49995990 ataaaatctcatctttacaccttaaatacactttagcattacactaaatagaact 49996044  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 8247541 - 8247585
Alignment:
Q  137 gacaccgacacatgtaattgcattcaattaattcaattttttaaa 181  Q
    ||||||||||||||||||| ||| || | ||||||||||||||||    
T  8247541 gacaccgacacatgtaattacatccagtcaattcaattttttaaa 8247585  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 7139752 - 7139802
Alignment:
Q  138 acaccgacacatgtaattgcattcaattaattcaattttttaaattatcac 188  Q
    |||| ||||||||| |||||||||| |||||||| ||| ||||||||||||    
T  7139752 acactgacacatgttattgcattcagttaattcattttcttaaattatcac 7139802  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 19045605 - 19045555
Alignment:
Q  148 atgtaattgcattcaattaattcaattttttaaattatcactgatgtcgat 198  Q
    |||| ||| |||| |||||||||| |||||||||||||||||||| |||||    
T  19045605 atgtgattacatttaattaattcatttttttaaattatcactgatctcgat 19045555  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 28173086 - 28173132
Alignment:
Q  137 gacaccgacacatgtaattgcattcaattaattcaattttttaaatt 183  Q
    ||||| ||||||||||| ||||||||||||||||| ||||| |||||    
T  28173086 gacactgacacatgtaactgcattcaattaattcattttttcaaatt 28173132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 28575839 - 28575807
Alignment:
Q  137 gacaccgacacatgtaattgcattcaattaatt 169  Q
    ||||||| |||||||||||||||||||||||||    
T  28575839 gacaccgtcacatgtaattgcattcaattaatt 28575807  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 138 - 166
Target Start/End: Original strand, 23918352 - 23918380
Alignment:
Q  138 acaccgacacatgtaattgcattcaatta 166  Q
    |||||||||||||||||||||||||||||    
T  23918352 acaccgacacatgtaattgcattcaatta 23918380  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 6424204 - 6424252
Alignment:
Q  137 gacaccgacacatgtaattgcattcaattaattcaattttttaaattat 185  Q
    ||||||||||||||| |||||||| ||||||||||  ||||||| ||||    
T  6424204 gacaccgacacatgtgattgcattgaattaattcatctttttaagttat 6424252  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 35198232 - 35198280
Alignment:
Q  137 gacaccgacacatgtaattgcattcaattaattcaattttttaaattat 185  Q
    ||||||| ||||||| ||| ||||||||||||||| ||| |||||||||    
T  35198232 gacaccgtcacatgtgattacattcaattaattcattttcttaaattat 35198280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 42043198 - 42043246
Alignment:
Q  137 gacaccgacacatgtaattgcattcaattaattcaattttttaaattat 185  Q
    ||||||||| ||||| ||| ||||||||||||||| ||| |||||||||    
T  42043198 gacaccgacgcatgttattacattcaattaattcattttattaaattat 42043246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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