View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_30 (Length: 345)
Name: NF9288_low_30
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_30 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 7978469 - 7978143
Alignment:
| Q |
1 |
tttgaaatactacttgaaatatgagcattttgatcttcatatagtactagacaacatgttaattgaaactttggtatttgaattttcctacagttactct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7978469 |
tttgaaatactacttgaaatatgagcattttgatcttcatatagtactagacaacatgttaattgaaactttggtatttgaattttcctacagttactct |
7978370 |
T |
|
| Q |
101 |
acaatttcctgggcagctagtctagataaaggaaaacaagaaaatgtagaatatggatataaggcacatagtacagcaggaacagtctttgacttcttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7978369 |
acaatttcctgggcagctagtctagataaaggaaaacaagaaaatgtacaatatggatataaggcacatagtacagcaggaacagtctttgacttcttta |
7978270 |
T |
|
| Q |
201 |
atgcacttggcactattgcttttgcctatgctggacacaatgtggtgttagagatccaagcaacaattccgtcgacaccggagaaaccatccaaggttcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7978269 |
atgcacttggcactattgcttttgcctatgctggacacaatgtggtgttagagatccaagcaacaattccgtcgacaccggagaaaccatccaaggttcc |
7978170 |
T |
|
| Q |
301 |
aatgtggagaggagttgttgttgcata |
327 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
7978169 |
aatgtggagaggagttgttgttgcata |
7978143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 176 - 324
Target Start/End: Original strand, 8042352 - 8042500
Alignment:
| Q |
176 |
gcaggaacagtctttgacttctttaatgcacttggcactattgcttttgcctatgctggacacaatgtggtgttagagatccaagcaacaattccgtcga |
275 |
Q |
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| T |
8042352 |
gcaggatctgtcttttatttctttaatgcacttggctctgttgcatttgcctttgctggacacattgtggtgctggagatccaagcaacaattccgtcta |
8042451 |
T |
|
| Q |
276 |
caccggagaaaccatccaaggttccaatgtggagaggagttgttgttgc |
324 |
Q |
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|||||||||||||||| |||| ||||||||||| ||||||||||||||| |
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| T |
8042452 |
caccggagaaaccatctaagggtccaatgtggaaaggagttgttgttgc |
8042500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 183 - 324
Target Start/End: Original strand, 8032455 - 8032596
Alignment:
| Q |
183 |
cagtctttgacttctttaatgcacttggcactattgcttttgcctatgctggacacaatgtggtgttagagatccaagcaacaattccgtcgacaccgga |
282 |
Q |
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|||||||| | |||||||||||||| ||| || |||| ||||||||||||||||| ||||||||| | |||||||||||||||||||| || ||||| || |
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| T |
8032455 |
cagtctttaatttctttaatgcactcggctctgttgcatttgcctatgctggacataatgtggtgctcgagatccaagcaacaattccatctacacctga |
8032554 |
T |
|
| Q |
283 |
gaaaccatccaaggttccaatgtggagaggagttgttgttgc |
324 |
Q |
| |
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| T |
8032555 |
gaaaccatctaagggtccaatgtggagaggtgttgttgttgc |
8032596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 176 - 327
Target Start/End: Complemental strand, 7971361 - 7971210
Alignment:
| Q |
176 |
gcaggaacagtctttgacttctttaatgcacttggcactattgcttttgcctatgctggacacaatgtggtgttagagatccaagcaacaattccgtcga |
275 |
Q |
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|||||| | |||||| | |||||||||||||||||| || |||| ||||||| ||| |||||||| |||||| | ||||||||||||||||||||||| | |
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| T |
7971361 |
gcaggatctgtctttaatttctttaatgcacttggctctgttgcatttgcctttgccggacacaacgtggtgctggagatccaagcaacaattccgtcta |
7971262 |
T |
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| Q |
276 |
caccggagaaaccatccaaggttccaatgtggagaggagttgttgttgcata |
327 |
Q |
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|||| ||||||||||| |||| ||||||||||| ||||||| |||||||||| |
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| T |
7971261 |
cacctgagaaaccatctaagggtccaatgtggaaaggagttattgttgcata |
7971210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 183 - 324
Target Start/End: Complemental strand, 2652 - 2511
Alignment:
| Q |
183 |
cagtctttgacttctttaatgcacttggcactattgcttttgcctatgctggacacaatgtggtgttagagatccaagcaacaattccgtcgacaccgga |
282 |
Q |
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|
|||||||| | |||||||||||||||||| |||| || ||||||||||| |||||||||||||| | ||||||||||||||||||||||| ||||| || |
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| T |
2652 |
cagtctttaatttctttaatgcacttggctctatcgcgtttgcctatgccggacacaatgtggtactggagatccaagcaacaattccgtctacacctga |
2553 |
T |
|
| Q |
283 |
gaaaccatccaaggttccaatgtggagaggagttgttgttgc |
324 |
Q |
| |
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||||||||| |||| ||||||||||||||| ||||||||||| |
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| T |
2552 |
gaaaccatctaagggtccaatgtggagaggtgttgttgttgc |
2511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 216 - 316
Target Start/End: Original strand, 43854450 - 43854550
Alignment:
| Q |
216 |
ttgcttttgcctatgctggacacaatgtggtgttagagatccaagcaacaattccgtcgacaccggagaaaccatccaaggttccaatgtggagaggagt |
315 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| ||||||||||| || || ||||| |||||||||||||||| |||||||||||||||||| |
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| T |
43854450 |
ttgcatttgcctatgctggacacaatgtggtgttggagattcaagcaacaatcccttccacaccagagaaaccatccaagggtccaatgtggagaggagt |
43854549 |
T |
|
| Q |
316 |
t |
316 |
Q |
| |
|
| |
|
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| T |
43854550 |
t |
43854550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 176 - 316
Target Start/End: Complemental strand, 41381798 - 41381658
Alignment:
| Q |
176 |
gcaggaacagtctttgacttctttaatgcacttggcactattgcttttgcctatgctggacacaatgtggtgttagagatccaagcaacaattccgtcga |
275 |
Q |
| |
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|||||| | |||||| | ||||||||||||||||| || |||||||||||||||| ||||||||||||||||| || || ||| | ||||| || || | |
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| T |
41381798 |
gcaggatctgtctttaatttctttaatgcacttggttctgttgcttttgcctatgcaggacacaatgtggtgttggaaattcaatctacaatcccatcta |
41381699 |
T |
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| Q |
276 |
caccggagaaaccatccaaggttccaatgtggagaggagtt |
316 |
Q |
| |
|
|||| ||||||||||| |||| ||||||||||| ||||||| |
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| T |
41381698 |
cacctgagaaaccatctaagggtccaatgtggaaaggagtt |
41381658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 14198244 - 14198106
Alignment:
| Q |
177 |
caggaacagtctttgacttctttaatgcacttggcactattgcttttgcctatgctggacacaatgtggtgttagagatccaagcaacaattccgtcgac |
276 |
Q |
| |
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||||||| ||||||| ||||| ||||| ||||| | | |||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| || || |
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| T |
14198244 |
caggaactgtctttggtttcttcaatgcccttggagatgtggcttttgcttatgccggacacaacgtggtgttagaaatccaagcaacaattccatctac |
14198145 |
T |
|
| Q |
277 |
accggagaaaccatccaaggttccaatgtggagaggagt |
315 |
Q |
| |
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|||||| |||||||| |||| |||||||||||||||||| |
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| T |
14198144 |
accggaaaaaccatctaagggtccaatgtggagaggagt |
14198106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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