View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_34 (Length: 300)
Name: NF9288_low_34
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 284
Target Start/End: Complemental strand, 2236347 - 2236078
Alignment:
| Q |
15 |
ggaacaattctatggtctacagctaaccctagcattaatagtactgctagtggccctgttagtgtggcaaatgaagttgtttttgttggatctacagata |
114 |
Q |
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| T |
2236347 |
ggaacaattctatggtctacagctaaccctagcattaatagtactgctagtggccctgttagtgtggcaaatgaagttgtttttgttggatctacagata |
2236248 |
T |
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| Q |
115 |
gattgggacacatttatgcaattaatggaagaaatggacatatattatggtcctatgaaactggagctagtgtttatgggggtatgtcaattagtaatgg |
214 |
Q |
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| T |
2236247 |
gattgggacacatttatgcaattaatggaagaaatggacatatattatggttctatgaaactggagctagtgtttatgggggtatgtcaattagtaatgg |
2236148 |
T |
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| Q |
215 |
atgtgtttatgtaggtcatggatataatgtctctttaggattctattctaactatactggtggaacctca |
284 |
Q |
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| T |
2236147 |
atgtgtttatgtaggtcatggatataatgtctctttaggattctattctaactatactggtggaacctca |
2236078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 25 - 244
Target Start/End: Complemental strand, 2228658 - 2228442
Alignment:
| Q |
25 |
tatggtctacagctaaccctagcattaatagtactgctagtggccctgttagtgtggcaaatgaagttgtttttgttggatctacagatagattgggaca |
124 |
Q |
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| T |
2228658 |
tatggactacagctaaccctagcaataatagt---gctaatggccctgttagtgttgcaaatgaagttgtttttgctggttctatggatagattaggaca |
2228562 |
T |
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| Q |
125 |
catttatgcaattaatggaagaaatggacatatattatggtcctatgaaactggagctagtgtttatgggggtatgtcaattagtaatggatgtgtttat |
224 |
Q |
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| T |
2228561 |
catttatgcacttaatgctaaaaatggaaaaattgtatggtcatatgaaactggagctaatgtttatggaggtatgtcaattagtgatggatgtatttat |
2228462 |
T |
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| Q |
225 |
gtaggtcatggatataatgt |
244 |
Q |
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| T |
2228461 |
gttggtcatggatataatgt |
2228442 |
T |
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