View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_39 (Length: 281)
Name: NF9288_low_39
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_39 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 281
Target Start/End: Complemental strand, 16565307 - 16565027
Alignment:
| Q |
10 |
aagcaaagggacattccatcattcctagcnnnnnnngtactttattaaacaattaaagtcgatattaaaggcttaaagcaacccatgcatgcccaccaat |
109 |
Q |
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| T |
16565307 |
aagcaaagggacattccatcattcctagcaaaaaaagtactttattaaacaattaaagtcgatattaaaggcttaaagcaacccatgcatgcccaccaat |
16565208 |
T |
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| Q |
110 |
gcaactgcaatgatggcactcagagtggaaatggagtcttttaagggtaaaaagcttataaaaacaattatgacaacgaatttgatcttagtttgtcata |
209 |
Q |
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| T |
16565207 |
gcaactgcaatgatggcactgagagtggaaatggagtcttttaagggtaaaaagcttataaaaacaattatgacaacgaatttgatcttagtttgtcata |
16565108 |
T |
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| Q |
210 |
ttggtgcatgat---------atattgcacagaactgtagttaaatatgacttatattattgcaatgtcataatttattta |
281 |
Q |
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| T |
16565107 |
ttggtgcatgatatatgatatatattgcacaaaactgtagttaaatatgacttatattattgcaatgacataattttttta |
16565027 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 52822524 - 52822457
Alignment:
| Q |
84 |
aaagcaacccatgcatgcccaccaatgcaactgcaatgatggcactcagagtggaaatggagtctttt |
151 |
Q |
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| T |
52822524 |
aaagcaacctatgcatccccaccaactcagctgcaataatgacactaagagtggaagtggagtctttt |
52822457 |
T |
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