View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288_low_4 (Length: 475)

Name: NF9288_low_4
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288_low_4
NF9288_low_4
[»] chr4 (5 HSPs)
chr4 (18-171)||(32767859-32768012)
chr4 (185-274)||(19240743-19240832)
chr4 (422-465)||(52327096-52327139)
chr4 (185-239)||(32767590-32767644)
chr4 (219-276)||(41361229-41361286)
[»] chr1 (2 HSPs)
chr1 (18-171)||(46155682-46155835)
chr1 (234-274)||(28199180-28199220)
[»] chr2 (3 HSPs)
chr2 (18-171)||(15613827-15613985)
chr2 (207-273)||(17088285-17088352)
chr2 (185-239)||(15614200-15614254)
[»] chr7 (3 HSPs)
chr7 (185-273)||(7505211-7505299)
chr7 (423-465)||(48252975-48253017)
chr7 (185-273)||(31272163-31272251)
[»] scaffold1449 (1 HSPs)
scaffold1449 (207-273)||(1611-1677)
[»] chr6 (3 HSPs)
chr6 (185-273)||(20139188-20139276)
chr6 (185-273)||(22193593-22193681)
chr6 (182-274)||(31655572-31655664)
[»] chr3 (2 HSPs)
chr3 (185-273)||(2868979-2869067)
chr3 (185-273)||(6888768-6888856)
[»] chr5 (2 HSPs)
chr5 (219-274)||(37206114-37206169)
chr5 (218-278)||(35038827-35038887)
[»] chr8 (1 HSPs)
chr8 (242-276)||(42935899-42935933)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 1e-76; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 32768012 - 32767859
Alignment:
Q  18 caactagaggtgaacatatgggtggggaaatgtggtataaagaggcaacaatatgtaaccgtgtactagacagtgggtgaagcaccaatgattctttgta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  32768012 caactagaggtgaacatatgggtggggaaatgtggtataaagaggcaacaatatgtaaccgtgtattagaccgtgggtgaagcaccaatgattctttgta 32767913  T
Q  118 atgtagcattatgtgctactctcatatttggtgagcattatgtaaataaacaca 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32767912 atgtagcattatgtgctactctcatatttggtgagcattatgtaaataaacaca 32767859  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 274
Target Start/End: Complemental strand, 19240832 - 19240743
Alignment:
Q  185 attcgagctgcaattataaggtccaaactctatattttattcgcgctttcgggccagtccatacaggccggtccgttttgacagctctac 274  Q
    ||||| ||||||||||| ||| |||||| ||| |||||||||| ||||||||||| |||||||    |||| ||||||||||||||||||    
T  19240832 attcgggctgcaattattaggcccaaaccctacattttattcgggctttcgggccggtccatatgacccggcccgttttgacagctctac 19240743  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 465
Target Start/End: Complemental strand, 52327139 - 52327096
Alignment:
Q  422 atcttagagcacccacatccatgccacccttatgagtagtataa 465  Q
    |||| |||||| ||||||||||||||||| ||||||||||||||    
T  52327139 atctaagagcagccacatccatgccacccatatgagtagtataa 52327096  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 32767644 - 32767590
Alignment:
Q  185 attcgagctgcaattataaggtccaaactctatattttattcgcgctttcgggcc 239  Q
    ||||| ||||||||||| ||| |||| | |||||||||||||| |||||||||||    
T  32767644 attcgggctgcaattattaggcccaagccctatattttattcgggctttcgggcc 32767590  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 41361286 - 41361229
Alignment:
Q  219 ttttattcgcgctttcgggccagtccatacaggccggtccgttttgacagctctacat 276  Q
    ||||||||| ||||||||||| | ||||| ||||  | ||||||||||||||||||||    
T  41361286 ttttattcgggctttcgggccggcccatataggctagcccgttttgacagctctacat 41361229  T

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Target: chr1 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 46155835 - 46155682
Alignment:
Q  18 caactagaggtgaacatatgggtggggaaatgtggtataaagaggcaacaatatgtaaccgtgtactagacagtgggtgaagcaccaatgattctttgta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  46155835 caactagaggtgaacatatgggtggggaaatgtggtataaagaggcaacaatatgtaaccgtgtattagacagtgggtgaagcaccaatgattctttata 46155736  T
Q  118 atgtagcattatgtgctactctcatatttggtgagcattatgtaaataaacaca 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46155735 atgtagcattatgtgctactctcatatttggtgagcattatgtaaataaacaca 46155682  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 28199220 - 28199180
Alignment:
Q  234 cgggccagtccatacaggccggtccgttttgacagctctac 274  Q
    |||||| | ||||||||||||| ||||||||||||||||||    
T  28199220 cgggccggcccatacaggccggcccgttttgacagctctac 28199180  T

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Target: chr2 (Bit Score: 131; Significance: 9e-68; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 15613827 - 15613985
Alignment:
Q  18 caactagaggtgaacatatgggtggggaaatgtggtataaagaggcaacaatatgtaaccgtgtactagacagtgggtg-----aagcaccaatgattct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     ||||||||||||||||    
T  15613827 caactagaggtgaacatatgggtggggaaatgtggtataaagaggcaacaatatgtaaccgtgtattagacagtgggtgaagttaagcaccaatgattct 15613926  T
Q  113 ttgtaatgtagcattatgtgctactctcatatttggtgagcattatgtaaataaacaca 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15613927 ttgtaatgtagcattatgtgctactctcatatttggtgagcattatgtaaacaaacaca 15613985  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 17088285 - 17088352
Alignment:
Q  207 ccaaactctatattttattcgcgctttcgggccagtcc-atacaggccggtccgttttgacagctcta 273  Q
    |||||| ||| |||||||||| ||||||||||| | || |||| |||||| |||||||||||||||||    
T  17088285 ccaaaccctacattttattcgggctttcgggccggcccaatacgggccggcccgttttgacagctcta 17088352  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 15614200 - 15614254
Alignment:
Q  185 attcgagctgcaattataaggtccaaactctatattttattcgcgctttcgggcc 239  Q
    ||||| ||||||||||| ||| |||| | |||||||||||||| |||||||||||    
T  15614200 attcgggctgcaattattaggcccaagccctatattttattcgggctttcgggcc 15614254  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 185 - 273
Target Start/End: Complemental strand, 7505299 - 7505211
Alignment:
Q  185 attcgagctgcaattataaggtccaaactctatattttattcgcgctttcgggccagtccatacaggccggtccgttttgacagctcta 273  Q
    ||||| ||||||||||| ||| |||| | ||| |||||||||  ||||||||||| | |||||| |||||| |||||||||||||||||    
T  7505299 attcgggctgcaattattaggcccaagccctacattttattcaggctttcgggccggcccatacgggccggcccgttttgacagctcta 7505211  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 423 - 465
Target Start/End: Complemental strand, 48253017 - 48252975
Alignment:
Q  423 tcttagagcacccacatccatgccacccttatgagtagtataa 465  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  48253017 tcttagagcacccacatccatgccacccatatgagtagtataa 48252975  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 273
Target Start/End: Original strand, 31272163 - 31272251
Alignment:
Q  185 attcgagctgcaattataaggtccaaactctatattttattcgcgctttcgggccagtccatacaggccggtccgttttgacagctcta 273  Q
    ||||| ||||||||||| ||| |||| | ||| |||||||||| ||||| ||| | | |||||| | |||  |||||||||||||||||    
T  31272163 attcgtgctgcaattattaggcccaagccctacattttattcgggcttttgggtcggcccatacggcccgacccgttttgacagctcta 31272251  T

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Target: scaffold1449 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold1449
Description:

Target: scaffold1449; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 1611 - 1677
Alignment:
Q  207 ccaaactctatattttattcgcgctttcgggccagtccatacaggccggtccgttttgacagctcta 273  Q
    |||||| ||| |||||||||| ||||||||||| | |||||| |||||| |||||||||||||||||    
T  1611 ccaaaccctacattttattcgggctttcgggccggcccatacgggccggcccgttttgacagctcta 1677  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 273
Target Start/End: Complemental strand, 20139276 - 20139188
Alignment:
Q  185 attcgagctgcaattataaggtccaaactctatattttattcgcgctttcgggccagtccatacaggccggtccgttttgacagctcta 273  Q
    ||||| ||||||||||| ||| |||| | |||  ||||||||| ||||||||||| | |||||| ||| || |||||||||||||||||    
T  20139276 attcgggctgcaattattaggcccaagccctacgttttattcgggctttcgggccggcccatacgggcgggcccgttttgacagctcta 20139188  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 273
Target Start/End: Original strand, 22193593 - 22193681
Alignment:
Q  185 attcgagctgcaattataaggtccaaactctatattttattcgcgctttcgggccagtccatacaggccggtccgttttgacagctcta 273  Q
    ||||| ||||||||||| ||| |||| | |||  ||||||||| ||||||||||| | |||||| ||| || |||||||||||||||||    
T  22193593 attcgggctgcaattattaggcccaagccctacgttttattcgggctttcgggccggcccatacgggcgggcccgttttgacagctcta 22193681  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 274
Target Start/End: Original strand, 31655572 - 31655664
Alignment:
Q  182 tttattcgagctgcaattataaggtccaaactctatattttattcgcgctttcgggccagtccatacaggccggtccgttttgacagctctac 274  Q
    |||||||| |||| |||| | ||| |||||| |||| ||||||||| ||||||||||  | |||| | | |||| ||||||||||||||||||    
T  31655572 tttattcgggctgtaatttttaggcccaaaccctatgttttattcgggctttcgggctggcccattcggcccggcccgttttgacagctctac 31655664  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 273
Target Start/End: Complemental strand, 2869067 - 2868979
Alignment:
Q  185 attcgagctgcaattataaggtccaaactctatattttattcgcgctttcgggccagtccatacaggccggtccgttttgacagctcta 273  Q
    ||||| ||||||||| | ||| |||| |||||  ||||||||| ||||||||||||| |||||| | |||  || ||||||||||||||    
T  2869067 attcgggctgcaattttcaggcccaagctctacgttttattcgggctttcgggccagcccatacggcccgaccccttttgacagctcta 2868979  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 273
Target Start/End: Original strand, 6888768 - 6888856
Alignment:
Q  185 attcgagctgcaattataaggtccaaactctatattttattcgcgctttcgggccagtccatacaggccggtccgttttgacagctcta 273  Q
    ||||| ||| ||||||| ||| |||| | ||||||||||| || ||||||||||| | |||||| |||||| || |||||||| |||||    
T  6888768 attcgggctccaattattaggcccaagccctatattttatgcgggctttcgggccggcccatacgggccggcccattttgacaactcta 6888856  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 37206114 - 37206169
Alignment:
Q  219 ttttattcgcgctttcgggccagtccatacaggccggtccgttttgacagctctac 274  Q
    ||||||||| ||||||||||| | | |||| |||||| ||||||||||||||||||    
T  37206114 ttttattcgggctttcgggccggcctatacgggccggcccgttttgacagctctac 37206169  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 35038827 - 35038887
Alignment:
Q  218 attttattcgcgctttcgggccagtccatacaggccggtccgttttgacagctctacatac 278  Q
    |||||||||| ||||||||||| | || ||| | |||| || |||||||||||||||||||    
T  35038827 attttattcgggctttcgggccggcccttacggcccggcccattttgacagctctacatac 35038887  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 276
Target Start/End: Original strand, 42935899 - 42935933
Alignment:
Q  242 tccatacaggccggtccgttttgacagctctacat 276  Q
    ||||||| |||||||||||||||||||||||||||    
T  42935899 tccatacgggccggtccgttttgacagctctacat 42935933  T

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