View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_40 (Length: 277)
Name: NF9288_low_40
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 28438949 - 28439197
Alignment:
| Q |
19 |
agatattcttcaatggaagaaaaatgtggtgacttgaaaaatgttgcaaactgaattagaatcagttgattaaattcaggtattgatgatgatctaatga |
118 |
Q |
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| T |
28438949 |
agatattcttcaatggaagaaaaatgtggtgacttgaaaaatgtaccaaactgaattagaatcagttgattaaattcaggtattgatgatgatctaatga |
28439048 |
T |
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| Q |
119 |
actgggagttttgtcttgacatggcaatcttaagcctcacaactgaaaaaggggtcggtgataagttacttattctctttttgggatctgtaatggaatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28439049 |
actgggagttttgtcttgacatggcaatcttaagcctcacaactgaaaaaggggtcggtgataagttacttattctctttttgggatctgtaatggaatt |
28439148 |
T |
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| Q |
219 |
tttggactgttgttaattgaaactgctagacttcaatgtcacacctttg |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28439149 |
tttggactgttgttaattgaaactgctagacttcaatgtcacacctttg |
28439197 |
T |
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