View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_42 (Length: 273)
Name: NF9288_low_42
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 52600486 - 52600217
Alignment:
| Q |
8 |
caatgtctggaaatcaaagtagctaattgtcctaagattcccactaatgaactccatgaatcctgttatacatatagaaa------------------tt |
89 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52600486 |
caatgtctggaaatcaaagtagctaattgtcctaagattcccactaatgaactccatgaatcctgttatacatatagaaacttcaacacagattgatatt |
52600387 |
T |
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| Q |
90 |
tacaatgctatggtatatgtataatgtcaaatatacttcaactacctgactgttgattagttgggataatcctcttcatcacctcttctggtaaattgcc |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52600386 |
tacaatgctatggtatatgtataatgtcaaatatacttcaactacctgactgttgattagttgggataatcctcttcatcacctcttctggtaaattgcc |
52600287 |
T |
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| Q |
190 |
aagcacaaataacagaaatatggttatttttataagccgcgcaaccatgggcaaaattaaactaaattat |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52600286 |
aagcacaaataacagaaatatggttatttttataagccgcgcaaccatgggcaaaattaaactaaattat |
52600217 |
T |
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