View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_44 (Length: 272)
Name: NF9288_low_44
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 9 - 271
Target Start/End: Original strand, 40802952 - 40803214
Alignment:
| Q |
9 |
gaagcagagagtaaagaggggtgcgcacatcaacaattaaaatggattgaaaatactctgtctattaagttaaagatcctatttaagtaagtagaactga |
108 |
Q |
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| T |
40802952 |
gaagcaaagagtaaagaggggtgcgcacatcaacaattaaaatggattgaaaatactctgtctattaagttaaagatcctatttaagtaagtagaactga |
40803051 |
T |
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| Q |
109 |
aaaaccaaataaaactagtttgattagcacactaattttagaaggatatggtcaatcgggaagaatccaaagcatgaaataacgatatacggaaattgga |
208 |
Q |
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| T |
40803052 |
aaaaccaaataaaactagtttgattagcacactaattttagaaggatatggttaatcgggaagaatccaaagcatgaaataacgatatacggaaattgga |
40803151 |
T |
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| Q |
209 |
tttagctcaaagaatataaccaaaatcttaccgctatgcacttcatcatggtgttcagacaat |
271 |
Q |
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| T |
40803152 |
tttagctcaaagaatataaccaaaatcttaccgctatgcacttcatcatggtgttcagacaat |
40803214 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 4642531 - 4642492
Alignment:
| Q |
224 |
ataaccaaaatcttaccgctatgcacttcatcatggtgtt |
263 |
Q |
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| T |
4642531 |
ataaccaaaatcttaccgcgatgcacttcatcattgtgtt |
4642492 |
T |
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