View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_45 (Length: 269)
Name: NF9288_low_45
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 41840495 - 41840410
Alignment:
| Q |
170 |
tataataaaagtctaaaataagccaacaaaatagcaccaaagagatttaattaaatgagnnnnnnnnctctactatagaagttttt |
255 |
Q |
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| T |
41840495 |
tataataaaagtctaaaataagccaacaagatagcaccaaagagatttaattaaatgagttttttttctctactatagaagttttt |
41840410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 41840701 - 41840651
Alignment:
| Q |
1 |
tgaaaatctcacctgcctcgtttcatgtagagccgacgagctacacatcag |
51 |
Q |
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| T |
41840701 |
tgaaaatctcacctgcctcgtttcatgtagagccgatgagctacacatcag |
41840651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 41840570 - 41840532
Alignment:
| Q |
133 |
ttaggtgatcaaaatacgtaactaatgatgagtccacta |
171 |
Q |
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| T |
41840570 |
ttaggtgatcaaaatacgtaactaatgatgagtccacta |
41840532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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