View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_47 (Length: 267)
Name: NF9288_low_47
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 27004940 - 27004691
Alignment:
| Q |
1 |
attgcggagttttgaaagcttttgagtaagaagctgtagagcattgtaataagcatgagcattaccagatattgttttagggaaactgatatccaattgt |
100 |
Q |
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| T |
27004940 |
attgcggagttttgaaagcttttgagtaagaagctgtagagcattgtaataagcatgagcattaccagatattgttttagggaaactgatatccaattgt |
27004841 |
T |
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| Q |
101 |
tggaggaaggggaatgaatctgcgatcaaggatatgggagtgtggcatagagaagccatattggaacatgtgagagaggtcaaggtggatttagtagtag |
200 |
Q |
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| T |
27004840 |
tggaggaaggggaatgaatctgcgatcaaggatatgtgagtgtggcatagagaagccatattggaacatgtgagagaggtcaaggtggatttagtagtag |
27004741 |
T |
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| Q |
201 |
tctttttgagaagagtttgcaaccctaagacggggaaggtggtgtggttg |
250 |
Q |
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| T |
27004740 |
tctttttgagaagagtttgcaaccctaagacggggaaggtggtgtggttg |
27004691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 33397498 - 33397618
Alignment:
| Q |
75 |
ttttagggaaactgatatccaattgttggaggaaggggaatgaatctgcgatcaaggatatgggagtgtggcatagagaagccatattggaacatgtgag |
174 |
Q |
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| T |
33397498 |
ttttagggtaactgatatccaattgttggaggaaagggaaggaatcggcaatgaaggatatgtcagtatggtatagagagccgatgttggaacaagtgag |
33397597 |
T |
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| Q |
175 |
agaggtcaaggtggatttagt |
195 |
Q |
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| T |
33397598 |
agaggtcaaggttgatttagt |
33397618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 186
Target Start/End: Original strand, 36876502 - 36876695
Alignment:
| Q |
2 |
ttgcggagttttgaaagcttttgagtaagaagctgtagagcattgtaataagcatgag---------cattaccagatattgttttagggaaactgatat |
92 |
Q |
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| T |
36876502 |
ttgcgaagttttgaaagcctttgagtaagaagctttagagcattattataagtgtcagtgtcgtagccattaccggttattgttttggggaaactgatat |
36876601 |
T |
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| Q |
93 |
ccaattgttggaggaaggggaatgaatctgcgatcaaggatatgggagtgtggcatagagaagccatattggaacatgtgagagaggtcaaggt |
186 |
Q |
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| T |
36876602 |
ccagttgttggaggaaaggaaaagaatgagcaatgaaggatatgtcagtatggtatagagagccaatgttggaacatgtgagagaggtcaaggt |
36876695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 37579845 - 37579753
Alignment:
| Q |
158 |
atattggaacatgtgagagaggtcaaggtggatttagtagtagtctttttgagaagagtttgcaaccctaagacggggaaggtggtgtggttg |
250 |
Q |
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| T |
37579845 |
atatttgaacaagtcagagaggtcaaggttgatgatatagtggtgtttttgagaatagtctgcaaccctaatacggggaaggtggggtggttg |
37579753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 37579998 - 37579953
Alignment:
| Q |
2 |
ttgcggagttttgaaagcttttgagtaagaagctgtagagcattgt |
47 |
Q |
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| T |
37579998 |
ttgcagagttttgaaagcttttgagtaagaacctttagagcattgt |
37579953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 33397425 - 33397458
Alignment:
| Q |
2 |
ttgcggagttttgaaagcttttgagtaagaagct |
35 |
Q |
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| T |
33397425 |
ttgcggagttttgaaagcttttgagtgagaagct |
33397458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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