View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_48 (Length: 265)
Name: NF9288_low_48
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 91 - 236
Target Start/End: Complemental strand, 40324423 - 40324278
Alignment:
| Q |
91 |
caaagaaatcaacatcagaaaagtatttggctttaaagactattgtaacgaatgtgattggacaagtgataaacttccaagctttctttgtcaggtaata |
190 |
Q |
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| T |
40324423 |
caaagaaatcaacatcagaaaagtatttggctttaaagactattgtaacgaatgtgattggacaagtgataaacttccaagctttctttgtcaggtaata |
40324324 |
T |
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| Q |
191 |
tgtcataattcatttaacggatacccctaacttcacactaacttgt |
236 |
Q |
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| T |
40324323 |
tgtcataattcatttaacggatacccctaacttcacactaatttgt |
40324278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 40324529 - 40324455
Alignment:
| Q |
19 |
agatcgaccaagactagtcacaatttaagtcacagttgaaaagtttaaacctctagaaaccaaagactttgccaa |
93 |
Q |
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| T |
40324529 |
agatcgaccaagactagtcacaatttatgtcacagttgaaaagtttaaacctctagaaaccaaagactttgccaa |
40324455 |
T |
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