View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_5 (Length: 469)
Name: NF9288_low_5
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 462
Target Start/End: Original strand, 43538936 - 43539380
Alignment:
| Q |
18 |
aaatggaacttatagcttccaagaaatactaactccagaaatttctgaaacatttggagatctcaaaaatttgagtagtaacaaaaacagagttaatgaa |
117 |
Q |
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| T |
43538936 |
aaatggaacttatagcttccaagaaatactaactccagaaatttctgaaacatttggagatctcaaaaatttgagtagtaacaaaaacagagttcatgaa |
43539035 |
T |
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| Q |
118 |
atagtaccggacaccggtagcgaagaaaacggtaaatttgttccttactctgtacaattattgtcaacagaaattgtggaaatagttgaggatggaaaga |
217 |
Q |
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| T |
43539036 |
atagtaccggacaccggtagcgaagaaaacggtaaatttgttccttactctgtacaattattgtcaacagaaattgtggaaatagttgaggatggaaaga |
43539135 |
T |
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| Q |
218 |
gcataacaatcaagaaagatagaagagttgatgacctttatgttgctgttggtgaagatgatatggatgtagtgaaatgggttcttgatcatgctgtttc |
317 |
Q |
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| T |
43539136 |
gcataacaatcaagaaagatagaagagttgatgacctttatgttgctgttggtgaagatgatatggatgtagtgaaatgggttcttgatcatgctgtttc |
43539235 |
T |
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| Q |
318 |
tcctggtgctaggatttttcttgtccatgtttctcctccaattacattgattcctacgccaggtatcacctaatcttgggtaactagtgataagacttgg |
417 |
Q |
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| T |
43539236 |
tcctggtgctaggatttttcttgtccatgtttctcctccaattacattgattcctacgccaggtatcacctaatcttgggtaactagtgataagacttgg |
43539335 |
T |
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| Q |
418 |
nnnnnnnnttatatagagcaacacccggaggccatgaaacacgaa |
462 |
Q |
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| T |
43539336 |
aaaaaaaattatatagagcaatacccgtaggccatgaaacacgaa |
43539380 |
T |
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