View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_50 (Length: 264)
Name: NF9288_low_50
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 24 - 254
Target Start/End: Complemental strand, 47057396 - 47057166
Alignment:
| Q |
24 |
tgtatgccacaaccagtgtttgatttttgtggcattggaatggggagtagacgcagtgatagccatttttgttatatgagagaaagatttcaacctcaaa |
123 |
Q |
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| T |
47057396 |
tgtatgccacaaccagtgtttgatttttgtggcattggaatggggagtagacgcagtgatagccatttttgttatatgagagaaagatttcaatctcaaa |
47057297 |
T |
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| Q |
124 |
acaccgtttgtgtttgtttgattcttttcggaaacccaaatggctatttaacattgagatcaagaaatataaaaggaaggaaaataaatggggacgcggc |
223 |
Q |
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| T |
47057296 |
acactgtttgtgtttgtttgattcttttcggaaacctaaatggctatttaacattgagatcaagaaatataaaaggaaggaaaataaatggggacgcggc |
47057197 |
T |
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| Q |
224 |
aatgagaacgagaacaggaaagaaacctttg |
254 |
Q |
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| T |
47057196 |
aatgagaacgagaacaggaaagaaacctttg |
47057166 |
T |
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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 254
Target Start/End: Complemental strand, 26970383 - 26970298
Alignment:
| Q |
168 |
tatttaacattgagatcaagaaatataaaaggaaggaaaataaatggggacgcggcaatgagaacgagaacaggaaagaaacctttg |
254 |
Q |
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| T |
26970383 |
tatttaacgttgagctcaagaaatatataaggtaagaaaataaatggggacgcatcaatgagaacgagaac-ggaaagaaacctttg |
26970298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 240
Target Start/End: Complemental strand, 26920796 - 26920711
Alignment:
| Q |
156 |
aacccaaa-tggctatttaacattgagatcaagaaatataaaaggaaggaaaataaatggggacgcggcaatgagaacgagaacag |
240 |
Q |
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| T |
26920796 |
aacccaaagtgggtatttaacgttgagctcaagaaatatataaggtaagcaaataaatggggacgcgtcaatgagaacgagaacag |
26920711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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