View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288_low_52 (Length: 258)

Name: NF9288_low_52
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288_low_52
NF9288_low_52
[»] chr6 (5 HSPs)
chr6 (151-255)||(7978530-7978634)
chr6 (57-121)||(9402514-9402578)
chr6 (142-181)||(29199903-29199942)
chr6 (127-184)||(34178344-34178401)
chr6 (61-113)||(10925550-10925602)
[»] chr8 (12 HSPs)
chr8 (57-119)||(17108301-17108363)
chr8 (57-138)||(29918532-29918611)
chr8 (57-119)||(5793510-5793572)
chr8 (57-138)||(17084191-17084272)
chr8 (57-121)||(6388604-6388668)
chr8 (152-190)||(15173889-15173927)
chr8 (127-189)||(33631909-33631971)
chr8 (57-119)||(36274968-36275029)
chr8 (134-190)||(30481430-30481486)
chr8 (57-121)||(30903971-30904035)
chr8 (129-181)||(30904064-30904116)
chr8 (134-190)||(45236088-45236144)
[»] chr2 (12 HSPs)
chr2 (57-121)||(13531875-13531939)
chr2 (57-121)||(25210303-25210367)
chr2 (57-121)||(34544410-34544474)
chr2 (57-128)||(17845485-17845555)
chr2 (134-189)||(44057907-44057962)
chr2 (57-119)||(29656836-29656898)
chr2 (57-134)||(30696850-30696925)
chr2 (58-121)||(13954672-13954735)
chr2 (58-121)||(14095879-14095942)
chr2 (127-190)||(43371570-43371633)
chr2 (134-190)||(3547190-3547246)
chr2 (71-119)||(42995773-42995821)
[»] chr7 (12 HSPs)
chr7 (58-121)||(11472811-11472874)
chr7 (133-190)||(42908050-42908107)
chr7 (142-181)||(10990879-10990918)
chr7 (142-190)||(18684010-18684058)
chr7 (130-190)||(37103136-37103196)
chr7 (134-181)||(22973416-22973463)
chr7 (134-189)||(32546220-32546275)
chr7 (157-190)||(29014961-29014994)
chr7 (134-190)||(12980405-12980461)
chr7 (134-190)||(26622979-26623035)
chr7 (152-184)||(28309538-28309570)
chr7 (134-190)||(45380135-45380191)
[»] chr4 (23 HSPs)
chr4 (130-181)||(45065274-45065325)
chr4 (57-119)||(33516174-33516236)
chr4 (57-118)||(37384204-37384265)
chr4 (57-121)||(8843904-8843968)
chr4 (57-121)||(8856868-8856932)
chr4 (57-121)||(9929267-9929331)
chr4 (57-121)||(33616215-33616279)
chr4 (57-121)||(39086087-39086150)
chr4 (70-121)||(9280989-9281040)
chr4 (134-189)||(21544608-21544663)
chr4 (70-118)||(4741318-4741366)
chr4 (61-121)||(21714075-21714135)
chr4 (57-121)||(36919054-36919118)
chr4 (134-181)||(14605944-14605991)
chr4 (63-121)||(21956914-21956971)
chr4 (59-121)||(42907820-42907881)
chr4 (142-190)||(1866559-1866607)
chr4 (134-190)||(9929177-9929233)
chr4 (57-121)||(12075731-12075795)
chr4 (142-190)||(25298843-25298891)
chr4 (134-190)||(29527841-29527897)
chr4 (88-120)||(43553408-43553440)
chr4 (65-121)||(50376451-50376507)
[»] chr1 (10 HSPs)
chr1 (57-119)||(16903441-16903503)
chr1 (57-121)||(42729043-42729107)
chr1 (134-189)||(25154837-25154892)
chr1 (57-121)||(13692570-13692635)
chr1 (57-121)||(36421692-36421756)
chr1 (57-121)||(39219184-39219248)
chr1 (60-119)||(43513130-43513189)
chr1 (61-119)||(5703275-5703332)
chr1 (60-113)||(47644966-47645019)
chr1 (61-122)||(48576216-48576277)
[»] chr5 (8 HSPs)
chr5 (57-121)||(24207612-24207676)
chr5 (57-121)||(12457442-12457506)
chr5 (60-120)||(16311394-16311453)
chr5 (57-119)||(27900503-27900565)
chr5 (65-119)||(35584050-35584103)
chr5 (65-119)||(38972855-38972909)
chr5 (57-121)||(17153094-17153158)
chr5 (93-121)||(18451985-18452013)
[»] scaffold0059 (1 HSPs)
scaffold0059 (127-189)||(70111-70173)
[»] chr3 (4 HSPs)
chr3 (59-121)||(37032197-37032259)
chr3 (127-190)||(40796147-40796209)
chr3 (57-118)||(27937664-27937725)
chr3 (57-121)||(772893-772956)
[»] scaffold0005 (1 HSPs)
scaffold0005 (134-181)||(211387-211434)
[»] scaffold0013 (1 HSPs)
scaffold0013 (134-180)||(128140-128186)


Alignment Details
Target: chr6 (Bit Score: 97; Significance: 9e-48; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 151 - 255
Target Start/End: Complemental strand, 7978634 - 7978530
Alignment:
Q  151 attacacgtcccgtacccgtattttgaaatcaggaaaaacgagtcatgacatttggtgagtcaaagccgaaaaagcctgtcaatttaggtttgattcggg 250  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7978634 attacacgtcccgtacccgtattttgaaatcgggaaaaacgagtcatgacatttggtgagtcaaagccgaaaaaacctgtcaatttaggtttgattcggg 7978535  T
Q  251 cggta 255  Q
    |||||    
T  7978534 cggta 7978530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 9402514 - 9402578
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    |||||||||||| |||||||||||  |||| ||| |||||||| ||| || ||||||||||||||    
T  9402514 tgtgagtgaaatgatttagggtttgggtttctatttatataaatggggtactaaattgattttct 9402578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 29199942 - 29199903
Alignment:
Q  142 tatatccctattacacgtcccgtacccgtattttgaaatc 181  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  29199942 tatatccctgttacccgtcccgtacccgtattttgaaatc 29199903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 34178401 - 34178344
Alignment:
Q  127 tttgggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatcagg 184  Q
    |||||| ||||||| ||||||| | |||| |||| ||||||||| |||||||||||||    
T  34178401 tttggggtgggtacctatatccttgttacccgtctcgtacccgtgttttgaaatcagg 34178344  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 10925602 - 10925550
Alignment:
Q  61 agtgaaattatttagggtttaagtttatatctatataaaagggataataaatt 113  Q
    |||||||| ||||||||||| || || ||| ||||||||||| ||||||||||    
T  10925602 agtgaaatgatttagggtttcagattctatttatataaaaggaataataaatt 10925550  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 17108301 - 17108363
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 119  Q
    |||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||    
T  17108301 tgtgagtgaaattatttagggtttaagtttctatttatataaaatggataataaattgatttt 17108363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 138
Target Start/End: Original strand, 29918532 - 29918611
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttctttacatttgggatgggt 138  Q
    |||||||||||| ||||||||||| ||||| ||| |||||||||| | ||||||||||||||  ||||||||||||| ||||    
T  29918532 tgtgagtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattgattt--tttacatttgggacgggt 29918611  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 5793510 - 5793572
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 119  Q
    |||||||||||| ||||||||||| ||||| ||| |||||||||  |||||| ||||||||||    
T  5793510 tgtgagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgatttt 5793572  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 17084272 - 17084191
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttctttacatttgggatgggt 138  Q
    |||||| | ||| |||||||| ||  |||||||| ||||||||| ||| |||||||||||||| |||||||| | |||||||    
T  17084272 tgtgaggggaataatttagggcttgggtttatatttatataaaaaggacaataaattgattttttttacattcgtgatgggt 17084191  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 6388668 - 6388604
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    |||||||||||| |||||||||||  |||| | | ||||||||| || |||||||||||||||||    
T  6388668 tgtgagtgaaatgatttagggtttgggtttctgtttatataaaatgggtaataaattgattttct 6388604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 15173927 - 15173889
Alignment:
Q  152 ttacacgtcccgtacccgtattttgaaatcaggaaaaac 190  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  15173927 ttacccgtcccgtacccgtattttgaaatcgggaaaaac 15173889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 33631971 - 33631909
Alignment:
Q  127 tttgggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaa 189  Q
    |||||| |||||||||||||||| ||||| |||||| ||||| | |||||| |||||| ||||    
T  33631971 tttggggtgggtacttatatccccattactcgtcccatacccatgttttgagatcaggtaaaa 33631909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 36274968 - 36275029
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 119  Q
    |||||||||||| ||||||||||   |||| ||| ||||||||||||||| ||||||||||||    
T  36274968 tgtgagtgaaatgatttagggttgg-gtttctatttatataaaagggatagtaaattgatttt 36275029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 30481486 - 30481430
Alignment:
Q  134 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 190  Q
    ||||||| |||||||  ||||| |||| | ||| |||||||||||||||||||||||    
T  30481486 tgggtacctatatcctcattactcgtctcatactcgtattttgaaatcaggaaaaac 30481430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 30903971 - 30904035
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    |||||||||||| ||||| |||||  |||| ||| ||||||||| |  |||||||||||||||||    
T  30903971 tgtgagtgaaatgatttaaggttttggtttctatttatataaaatgtgtaataaattgattttct 30904035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 30904064 - 30904116
Alignment:
Q  129 tgggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatc 181  Q
    |||| |||||||||||||| | ||||| |||| ||||||||| ||||||||||    
T  30904064 tggggtgggtacttatatctccattacccgtctcgtacccgtgttttgaaatc 30904116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 45236088 - 45236144
Alignment:
Q  134 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 190  Q
    ||||||| ||||| || ||||| |||||| ||||||| ||||||||||||| |||||    
T  45236088 tgggtacctatatacccattacccgtcccatacccgtgttttgaaatcagggaaaac 45236144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 13531875 - 13531939
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    |||||||||||| ||||||||||| ||||| ||| ||||||||| ||||||||||||||||||||    
T  13531875 tgtgagtgaaatgatttagggtttgagtttctatttatataaaatggataataaattgattttct 13531939  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 25210303 - 25210367
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    |||||||||||| ||||||||||| ||||| ||| ||||||||| || ||| |||||||||||||    
T  25210303 tgtgagtgaaatgatttagggtttgagtttctatttatataaaatgggtaacaaattgattttct 25210367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 34544474 - 34544410
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    ||||| |||||||||||||||||| ||||| ||| ||||||||| || |||||||| ||||||||    
T  34544474 tgtgaatgaaattatttagggtttgagtttttatttatataaaatgggtaataaatagattttct 34544410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 17845555 - 17845485
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttctttacatt 128  Q
    |||||||||||| ||||||| ||  ||||| ||| ||||||||| |||||||||||||||||| ||||||||    
T  17845555 tgtgagtgaaatgatttaggtttggagtttctatttatataaaaaggataataaattgatttt-tttacatt 17845485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 44057907 - 44057962
Alignment:
Q  134 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaa 189  Q
    ||||||| |||||||| ||||| ||||||||||| |||||||||||||||| ||||    
T  44057907 tgggtacatatatccccattacccgtcccgtaccggtattttgaaatcagggaaaa 44057962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 29656898 - 29656836
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 119  Q
    ||||||| |||| ||||||||||   |||| ||| ||||||||||||||||||||||||||||    
T  29656898 tgtgagtcaaatgatttagggttatggtttttatttatataaaagggataataaattgatttt 29656836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 30696850 - 30696925
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttctttacatttgggat 134  Q
    ||||||||| || ||||||||||| | ||| ||| ||||||||| || ||||||||||||||  ||||||||||||||    
T  30696850 tgtgagtgacatgatttagggtttgaatttctatttatataaaatgggtaataaattgattt--tttacatttgggat 30696925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 13954672 - 13954735
Alignment:
Q  58 gtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    ||||||||||| ||||||||||  ||||| ||| |||||||||| | |||||| ||||||||||    
T  13954672 gtgagtgaaatgatttagggttcgagtttctatttatataaaagtggtaataagttgattttct 13954735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 14095879 - 14095942
Alignment:
Q  58 gtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    ||||||||||| ||||||||||  ||||| ||| |||||||||| | |||||| ||||||||||    
T  14095879 gtgagtgaaatgatttagggttcgagtttctatttatataaaagtggtaataagttgattttct 14095942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 43371570 - 43371633
Alignment:
Q  127 tttgggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 190  Q
    |||||| ||||||| ||||||||  |||| ||||||||||||||||||| ||||| || |||||    
T  43371570 tttggggtgggtacatatatccccgttacccgtcccgtacccgtattttaaaatcggggaaaac 43371633  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 3547190 - 3547246
Alignment:
Q  134 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 190  Q
    ||||||| |||||| |  |||| ||||||||||||||||||||||||| | ||||||    
T  3547190 tgggtacatatatctccgttacccgtcccgtacccgtattttgaaatcggtaaaaac 3547246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 42995773 - 42995821
Alignment:
Q  71 tttagggtttaagtttatatctatataaaagggataataaattgatttt 119  Q
    |||| ||||||||||| ||| |||||||||| ||||||||||| |||||    
T  42995773 tttacggtttaagtttttatttatataaaagagataataaattaatttt 42995821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 121
Target Start/End: Complemental strand, 11472874 - 11472811
Alignment:
Q  58 gtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    ||||||||||| |||||||||||  |||| ||| ||||||||||| ||||||||||||||||||    
T  11472874 gtgagtgaaatgatttagggttttggtttctatttatataaaaggtataataaattgattttct 11472811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 42908107 - 42908050
Alignment:
Q  133 atgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 190  Q
    |||||||| |||||||| ||||| ||||||||||||||||||||||||| || |||||    
T  42908107 atgggtacatatatccccattacccgtcccgtacccgtattttgaaatcggggaaaac 42908050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 10990918 - 10990879
Alignment:
Q  142 tatatccctattacacgtcccgtacccgtattttgaaatc 181  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  10990918 tatatccctattacccgtcccgtacccgtattttgaaatc 10990879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 18684010 - 18684058
Alignment:
Q  142 tatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 190  Q
    ||||||||| |||| ||||||||||||||||||||||||| || |||||    
T  18684010 tatatccctgttacccgtcccgtacccgtattttgaaatcggggaaaac 18684058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 37103196 - 37103136
Alignment:
Q  130 gggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 190  Q
    ||||||||| | |||||||   |||| | ||||||||||||||||||||||||||||||||    
T  37103196 gggatgggtgcatatatcctcgttacccttcccgtacccgtattttgaaatcaggaaaaac 37103136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 22973416 - 22973463
Alignment:
Q  134 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatc 181  Q
    |||||||  ||||||| ||||| |||||||||||||||||||||||||    
T  22973416 tgggtacagatatccccattacccgtcccgtacccgtattttgaaatc 22973463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 32546220 - 32546275
Alignment:
Q  134 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaa 189  Q
    ||||||| ||||||||  |||| ||| ||||||||||||||||||||| |||||||    
T  32546220 tgggtacatatatccccgttacccgttccgtacccgtattttgaaatcgggaaaaa 32546275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 190
Target Start/End: Complemental strand, 29014994 - 29014961
Alignment:
Q  157 cgtcccgtacccgtattttgaaatcaggaaaaac 190  Q
    ||||||||||||||||||||||||| ||||||||    
T  29014994 cgtcccgtacccgtattttgaaatcgggaaaaac 29014961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 12980405 - 12980461
Alignment:
Q  134 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 190  Q
    ||||||||||||| || ||||| |||||| ||||||| |||||||||| || |||||    
T  12980405 tgggtacttatatacccattacccgtcccatacccgtgttttgaaatcggggaaaac 12980461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 26622979 - 26623035
Alignment:
Q  134 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 190  Q
    ||||||||||||| || ||||| | |||| ||||||| ||||||||||||| |||||    
T  26622979 tgggtacttatatacccattacccatcccatacccgtgttttgaaatcagggaaaac 26623035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 28309538 - 28309570
Alignment:
Q  152 ttacacgtcccgtacccgtattttgaaatcagg 184  Q
    |||| ||||||||||||||||||||||||||||    
T  28309538 ttacccgtcccgtacccgtattttgaaatcagg 28309570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 45380135 - 45380191
Alignment:
Q  134 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 190  Q
    ||||||| ||||| ||  |||| |||||| |||||||||||||||||| ||||||||    
T  45380135 tgggtacctatatacccgttacccgtcccatacccgtattttgaaatcgggaaaaac 45380191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 45065274 - 45065325
Alignment:
Q  130 gggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatc 181  Q
    ||||||||||| ||||||||| |||| |||||||||||||||||||||||||    
T  45065274 gggatgggtacatatatccctgttactcgtcccgtacccgtattttgaaatc 45065325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 33516236 - 33516174
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 119  Q
    |||||||||||| ||||||||||| ||||| ||| |||||||||||| ||||| |||||||||    
T  33516236 tgtgagtgaaatgatttagggtttgagtttttatttatataaaaggggtaatacattgatttt 33516174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 37384204 - 37384265
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattt 118  Q
    |||||||||||| ||||||||||| |  || ||| |||||||||||||||||||||||||||    
T  37384204 tgtgagtgaaatgatttagggtttgaacttctatttatataaaagggataataaattgattt 37384265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 8843968 - 8843904
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    |||||||||||| ||||||| ||||||||| ||| ||||| |||||| ||||||||| |||||||    
T  8843968 tgtgagtgaaatgatttaggatttaagtttctatttatatgaaaggggtaataaattaattttct 8843904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 8856932 - 8856868
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    |||||||||||| ||||||| ||||||||| ||| ||||| |||||| ||||||||| |||||||    
T  8856932 tgtgagtgaaatgatttaggatttaagtttctatttatatgaaaggggtaataaattaattttct 8856868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 9929331 - 9929267
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    ||||||||||||||||||| |||| ||||||||| |||||  ||| | |||||||||||||||||    
T  9929331 tgtgagtgaaattatttagagtttcagtttatatttatatggaagaggtaataaattgattttct 9929267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 33616279 - 33616215
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    |||||||||||| |||||||||||   ||| ||| |||||||||||| |||||||||||||||||    
T  33616279 tgtgagtgaaatgatttagggttttgatttttatttatataaaaggggtaataaattgattttct 33616215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 39086087 - 39086150
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    |||||||||||| ||||||||||||||||| ||| ||||||||| || || ||||||||||||||    
T  39086087 tgtgagtgaaatgatttagggtttaagtttctatttatataaaaagg-tagtaaattgattttct 39086150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 9281040 - 9280989
Alignment:
Q  70 atttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    ||||||||||| | ||| |||||||||||||||||||||||||| |||||||    
T  9281040 atttagggtttgaatttctatctatataaaagggataataaatttattttct 9280989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 21544608 - 21544663
Alignment:
Q  134 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaa 189  Q
    ||||||| |||||||| |||||  |||||||||||||||||||||||| |||||||    
T  21544608 tgggtacatatatccccattacctgtcccgtacccgtattttgaaatcgggaaaaa 21544663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 4741366 - 4741318
Alignment:
Q  70 atttagggtttaagtttatatctatataaaagggataataaattgattt 118  Q
    ||||||||||| ||||| ||| ||||||||| |||||||||||||||||    
T  4741366 atttagggtttgagtttctatttatataaaatggataataaattgattt 4741318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 21714135 - 21714075
Alignment:
Q  61 agtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    |||||||| ||||||||||| ||||| ||| |||||||||| | ||||||||| |||||||    
T  21714135 agtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattaattttct 21714075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 36919054 - 36919118
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    |||||||||||| |||||| |||| ||||| ||| |||||||||| | ||||||| |||||||||    
T  36919054 tgtgagtgaaatgatttagagtttgagtttctatttatataaaagtggtaataaactgattttct 36919118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 181
Target Start/End: Complemental strand, 14605991 - 14605944
Alignment:
Q  134 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatc 181  Q
    ||||||| ||||||||| |||| |||| ||||||||||||||||||||    
T  14605991 tgggtacatatatccctgttacccgtctcgtacccgtattttgaaatc 14605944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 21956971 - 21956914
Alignment:
Q  63 tgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    |||||| |||||||||||  |||| ||| |||||||||||| |||||||||||||||||    
T  21956971 tgaaatgatttagggtttgggtttttatttatataaaaggg-taataaattgattttct 21956914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 42907820 - 42907881
Alignment:
Q  59 tgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    |||||||||| ||||||||||| ||||| ||| |||||||||| | || ||||||||||||||    
T  42907820 tgagtgaaatgatttagggtttgagtttctatttatataaaagag-tagtaaattgattttct 42907881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 1866607 - 1866559
Alignment:
Q  142 tatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 190  Q
    |||||||  ||||| |||| |||||||||||||||||||| ||||||||    
T  1866607 tatatccgcattacccgtctcgtacccgtattttgaaatcgggaaaaac 1866559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 9929233 - 9929177
Alignment:
Q  134 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 190  Q
    ||||||| ||||||| | |||| ||| |  |||||||||||||||||||||||||||    
T  9929233 tgggtacctatatccatgttacccgtactatacccgtattttgaaatcaggaaaaac 9929177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 12075795 - 12075731
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    |||| ||||||| ||| || |||| ||||| ||| ||||||||| || |||||||||||||||||    
T  12075795 tgtgggtgaaatgattcagagttttagtttctatttatataaaatgggtaataaattgattttct 12075731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 25298891 - 25298843
Alignment:
Q  142 tatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 190  Q
    |||||||| ||||| | |||||||||||| |||||||||| ||||||||    
T  25298891 tatatccccattacccatcccgtacccgtgttttgaaatccggaaaaac 25298843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 29527841 - 29527897
Alignment:
Q  134 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 190  Q
    ||||||| ||||||||  |||| |||| |||||||||||||||||||| || |||||    
T  29527841 tgggtacatatatccccgttacccgtcacgtacccgtattttgaaatcggggaaaac 29527897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 43553408 - 43553440
Alignment:
Q  88 tatctatataaaagggataataaattgattttc 120  Q
    |||||||||||||||| ||||||||||||||||    
T  43553408 tatctatataaaaggggtaataaattgattttc 43553440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 50376507 - 50376451
Alignment:
Q  65 aaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    |||| |||||| |||| ||||| ||| ||||||||| ||| ||||||||||||||||    
T  50376507 aaataatttagcgttttagtttctatttatataaaatggaaaataaattgattttct 50376451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 16903441 - 16903503
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 119  Q
    |||||||||||| ||||||||||| ||||||||| ||||||||| ||  ||||||||||||||    
T  16903441 tgtgagtgaaataatttagggtttgagtttatatttatataaaaagggcaataaattgatttt 16903503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 42729107 - 42729043
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    |||||||||||| |||||| || ||||||| ||| |||||||||||||| ||||||| |||||||    
T  42729107 tgtgagtgaaatgatttagtgtataagtttctatttatataaaagggatgataaatttattttct 42729043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 25154892 - 25154837
Alignment:
Q  134 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaa 189  Q
    |||||||||||||||| ||||| |||||||||| ||| |||||||||| |||||||    
T  25154892 tgggtacttatatccccattactcgtcccgtactcgtgttttgaaatcgggaaaaa 25154837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 13692570 - 13692635
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataat-aaattgattttct 121  Q
    |||| ||||||| |||||||||||  |||| ||| ||||||||||||||||| |||||||||||||    
T  13692570 tgtgggtgaaatgatttagggttttggtttctatttatataaaagggataataaaattgattttct 13692635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 36421692 - 36421756
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    ||||| |||||| |||||| |||  ||||| ||| ||||||| ||||||||||||||||||||||    
T  36421692 tgtgaatgaaatgatttagagttcgagtttttatttatataagagggataataaattgattttct 36421756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 39219184 - 39219248
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    |||||| ||||| ||||||||||| ||||| ||| |||||||||| | ||||||||| |||||||    
T  39219184 tgtgagcgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattaattttct 39219248  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 43513189 - 43513130
Alignment:
Q  60 gagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 119  Q
    ||||||||||||||||||||| ||||| ||| ||||||||| |  | |||||||||||||    
T  43513189 gagtgaaattatttagggtttgagtttctatttatataaaaagagttataaattgatttt 43513130  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 5703332 - 5703275
Alignment:
Q  61 agtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 119  Q
    |||||||| ||||||| ||| ||||||||| ||||||||||  ||||||||||||||||    
T  5703332 agtgaaatgatttaggatttgagtttatat-tatataaaagatataataaattgatttt 5703275  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 47645019 - 47644966
Alignment:
Q  60 gagtgaaattatttagggtttaagtttatatctatataaaagggataataaatt 113  Q
    ||||||||| ||||||| | | ||||| ||| ||||||||||||||||||||||    
T  47645019 gagtgaaatgatttaggatctgagtttctatttatataaaagggataataaatt 47644966  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 48576277 - 48576216
Alignment:
Q  61 agtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttctt 122  Q
    |||||||| ||||||||||| || || ||| |||| |||| |||| ||||||||||||||||    
T  48576277 agtgaaatgatttagggtttgagattttatttatacaaaaaggattataaattgattttctt 48576216  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 24207612 - 24207676
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    |||||||||| ||||||||||||| ||||| ||| |||||||||||  ||||||||| |||||||    
T  24207612 tgtgagtgaagttatttagggttttagtttttatttatataaaaggattaataaattaattttct 24207676  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 12457442 - 12457506
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    |||||||||||| ||||||  |||| |||| ||| ||||| |||||| |||||||||||||||||    
T  12457442 tgtgagtgaaatgatttagactttaggtttctatttatattaaaggggtaataaattgattttct 12457506  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 16311453 - 16311394
Alignment:
Q  60 gagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttc 120  Q
    |||| |||| |||||||||||  |||| ||| |||||||||||||||||||||||||||||    
T  16311453 gagtaaaatgatttagggtttg-gtttctatttatataaaagggataataaattgattttc 16311394  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 27900565 - 27900503
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 119  Q
    ||||| |||||| ||||||||||| ||||| ||| |||||||||| |  ||||||||||||||    
T  27900565 tgtgactgaaatgatttagggtttcagtttctatttatataaaagaggaaataaattgatttt 27900503  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 35584050 - 35584103
Alignment:
Q  65 aaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 119  Q
    |||| ||||||||||| ||||| ||| |||||||||||| |||||||||||||||    
T  35584050 aaatgatttagggtttgagtttctatttatataaaaggg-taataaattgatttt 35584103  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 38972855 - 38972909
Alignment:
Q  65 aaattatttagggtttaagtttatatctatataaaagggataataaattgatttt 119  Q
    |||| ||||||||||| |||||  || |||||||||||| |||||||||||||||    
T  38972855 aaatgatttagggtttcagtttcgatttatataaaagggttaataaattgatttt 38972909  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 17153094 - 17153158
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    |||||||||||||||||||| |||   ||| ||| ||| || ||||| |||||||||||||||||    
T  17153094 tgtgagtgaaattatttaggttttggatttctatttatctagaaggggtaataaattgattttct 17153158  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 18452013 - 18451985
Alignment:
Q  93 atataaaagggataataaattgattttct 121  Q
    |||||||||||||||||||||||||||||    
T  18452013 atataaaagggataataaattgattttct 18451985  T

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Target: scaffold0059 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 70111 - 70173
Alignment:
Q  127 tttgggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaa 189  Q
    |||||| ||||||| |||||||   |||| ||||||||||||||||| |||||||||||||||    
T  70111 tttggggtgggtacatatatcctcgttacccgtcccgtacccgtattatgaaatcaggaaaaa 70173  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 37032259 - 37032197
Alignment:
Q  59 tgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    |||||||||| ||||||||||| ||||| ||| ||||||||| || ||||||||| |||||||    
T  37032259 tgagtgaaatgatttagggtttgagtttttatttatataaaatgggtaataaattaattttct 37032197  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 40796209 - 40796147
Alignment:
Q  127 tttgggatgggtacttatatccctattacacgtcccgtacccgtattttgaaatcaggaaaaac 190  Q
    |||||| ||||||| | |||||  ||||| ||||||||||||||||||||||||| ||||||||    
T  40796209 tttggggtgggtacatgtatcctcattacccgtcccgtacccgtattttgaaatc-ggaaaaac 40796147  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 27937664 - 27937725
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattt 118  Q
    |||||||||||| |||||||||||| |||| ||| ||||||||||   ||||||||| ||||    
T  27937664 tgtgagtgaaatgatttagggtttaggtttctatttatataaaagctgtaataaattaattt 27937725  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 772956 - 772893
Alignment:
Q  57 tgtgagtgaaattatttagggtttaagtttatatctatataaaagggataataaattgattttct 121  Q
    |||||||||||| ||| | ||||| ||||| ||| |||| ||||||| |||||||||||||||||    
T  772956 tgtgagtgaaatgattcaaggtttgagtttctatttatacaaaaggg-taataaattgattttct 772893  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 211387 - 211434
Alignment:
Q  134 tgggtacttatatccctattacacgtcccgtacccgtattttgaaatc 181  Q
    ||||||| ||||||||| |||| |||| ||||||||||||||||||||    
T  211387 tgggtacatatatccctgttacccgtctcgtacccgtattttgaaatc 211434  T

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Target: scaffold0013 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 128186 - 128140
Alignment:
Q  134 tgggtacttatatccctattacacgtcccgtacccgtattttgaaat 180  Q
    ||||||| |||||||| ||||| ||||||||||||||||| ||||||    
T  128186 tgggtacatatatccccattacccgtcccgtacccgtattatgaaat 128140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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