View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288_low_53 (Length: 254)

Name: NF9288_low_53
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288_low_53
NF9288_low_53
[»] chr5 (11 HSPs)
chr5 (4-91)||(25183465-25183553)
chr5 (120-173)||(25726207-25726260)
chr5 (120-172)||(25183607-25183659)
chr5 (120-176)||(25226951-25227007)
chr5 (120-176)||(25291108-25291164)
chr5 (194-240)||(25183328-25183374)
chr5 (120-162)||(25092889-25092931)
chr5 (120-162)||(25150859-25150901)
chr5 (194-239)||(14396949-14396994)
chr5 (194-240)||(25226684-25226730)
chr5 (194-240)||(25290840-25290886)


Alignment Details
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 25183465 - 25183553
Alignment:
Q  4 cataactataaaattgtatcttcaagaaagagcaatttcttgaaa--atagtagtcatctcatatctcataaacatcaaatgaaagcaat 91  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||    
T  25183465 cataactataaaaatgtatctttaagaaagagcaatttcttgaaaatatagtagtcatctcatatctcataaacatcaaa-gaaagcaat 25183553  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 25726260 - 25726207
Alignment:
Q  120 tacaaatgagtttagaaactcggtttgaacttgaaatttaaatccttgttgcga 173  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25726260 tacaaatgagtttagaaactcggtttgaacttgaaatttaaatcattgttgcga 25726207  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 25183607 - 25183659
Alignment:
Q  120 tacaaatgagtttagaaactcggtttgaacttgaaatttaaatccttgttgcg 172  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  25183607 tacaaatgagtttagaaactcggtttgaacttgaaatttaactcattgttgcg 25183659  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 25226951 - 25227007
Alignment:
Q  120 tacaaatgagtttagaaactcggtttgaacttgaaatttaaatccttgttgcgattt 176  Q
    |||||||||||||||||||||| ||| ||||||||||||||||| |||||| |||||    
T  25226951 tacaaatgagtttagaaactcgatttaaacttgaaatttaaatcattgttgtgattt 25227007  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 25291108 - 25291164
Alignment:
Q  120 tacaaatgagtttagaaactcggtttgaacttgaaatttaaatccttgttgcgattt 176  Q
    |||||||||||||||||||||| ||| ||||||||||||||||| |||||| |||||    
T  25291108 tacaaatgagtttagaaactcgatttaaacttgaaatttaaatcattgttgtgattt 25291164  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 25183328 - 25183374
Alignment:
Q  194 gtttttatcccttaagtccttactttctgcttgcataaatacctttg 240  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||    
T  25183328 gtttttatcccttaagtctttactttctgcttgcataaatagctttg 25183374  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 25092889 - 25092931
Alignment:
Q  120 tacaaatgagtttagaaactcggtttgaacttgaaatttaaat 162  Q
    ||||||||| ||||||||||| |||||||||||||||||||||    
T  25092889 tacaaatgactttagaaactcagtttgaacttgaaatttaaat 25092931  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 25150859 - 25150901
Alignment:
Q  120 tacaaatgagtttagaaactcggtttgaacttgaaatttaaat 162  Q
    ||||||||| ||||||||||| |||||||||||||||||||||    
T  25150859 tacaaatgactttagaaactcagtttgaacttgaaatttaaat 25150901  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 14396994 - 14396949
Alignment:
Q  194 gtttttatcccttaagtccttactttctgcttgcataaataccttt 239  Q
    |||||||||||||||||| | |||||| ||||||||||||||||||    
T  14396994 gtttttatcccttaagtcttcactttcagcttgcataaataccttt 14396949  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 25226684 - 25226730
Alignment:
Q  194 gtttttatcccttaagtccttactttctgcttgcataaatacctttg 240  Q
    |||||||||||| ||||| |||||||| |||||||||||| ||||||    
T  25226684 gtttttatccctcaagtctttactttcagcttgcataaatgcctttg 25226730  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 25290840 - 25290886
Alignment:
Q  194 gtttttatcccttaagtccttactttctgcttgcataaatacctttg 240  Q
    |||||||||||| ||||| |||||||| |||||||||||| ||||||    
T  25290840 gtttttatccctcaagtctttactttcagcttgcataaatgcctttg 25290886  T

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