View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_55 (Length: 251)
Name: NF9288_low_55
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_55 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 34894900 - 34895142
Alignment:
| Q |
1 |
tatttgtcttaacagtcataatgggttcccatgagcctttaggagagcctgttagaaaactcatgatgaataaaaatcacnnnnnnnnnnnnnnnnnn-- |
98 |
Q |
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| T |
34894900 |
tatttgtcttaacagtcataatgggttcccatgagcctttaggagagcctgttagaaaactcatgatgaataaaaatcactttttttacttttttttttt |
34894999 |
T |
|
| Q |
99 |
-cttcttctgatttttcacagtaaaaatggcaagagaatgaacaaaatgaatgcttttttctgttattttactgatcacacaaaacaaaacaagcccaga |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34895000 |
tcttcttctgatttttcacagtaaaaatggcaagagaatgaacaaaatgaatgctttt-tctgttattttactgatcacacaaaacaaaacaagcccaga |
34895098 |
T |
|
| Q |
198 |
aagaaaagatataaactttgaaatgggtttaatcaaaatctctg |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34895099 |
aagaaaagatataaactttgaaatgggtttaatcaaaatctctg |
34895142 |
T |
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