View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_57 (Length: 251)
Name: NF9288_low_57
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 40885598 - 40885361
Alignment:
| Q |
1 |
tattgttctccagtccgaacccaacaaagttctactttcttttgatgttttgcaatcctcttcaatattttttgtggatctgcttttcctgagatgtata |
100 |
Q |
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| T |
40885598 |
tattgttctccagtccgaacccaacaaagttctactttcttttgatgttttgcaatcctcttcaatattttttgtggatctgcttttcctgagatgtata |
40885499 |
T |
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| Q |
101 |
tcatcccttcatttgtatcaaaattgtagtttacacctaaaatcaacattaacatatagtatatttagatatttcatcataagtaaacaaatagatttaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40885498 |
tcatcccttcatttgtatcaaaattgtagtttacacctaaaatcaacattaacatatagtatatttagatatttcatcataagaaaacaaatagatttaa |
40885399 |
T |
|
| Q |
201 |
aattaaaacttgaaggatgagacacaaaacacgtacct |
238 |
Q |
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|||||||||||| ||||||||||||||||||| ||||| |
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| T |
40885398 |
aattaaaacttgcaggatgagacacaaaacacatacct |
40885361 |
T |
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