View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_6 (Length: 461)
Name: NF9288_low_6
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 20 - 418
Target Start/End: Complemental strand, 1370872 - 1370497
Alignment:
| Q |
20 |
gaggcttcaagagttctgctttaaaagggaagacctgtattggaaatatttagaattgatcaatgttcatttcgatattaaagatccaatgataattgac |
119 |
Q |
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| T |
1370872 |
gaggcttcaagagttctgctttaaaagggaatacctgtattggaaatatttagaattgatcaatgttcatttcgatattaaagatccaatgataattgac |
1370773 |
T |
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| Q |
120 |
atttataaatcaaacacatgatttctcaccttatctctaagaaagttcataaccttttcacgaataacatcgtctgtattcggctctatc-taccagaag |
218 |
Q |
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| T |
1370772 |
atttataaatcaaacacataatttctcaccttatctctaagaaagttcataaccttttcacgaataacatcgt-----ttcggctctatcataccagaag |
1370678 |
T |
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| Q |
219 |
taacatgcttaaacaaagccttcaaagaagctgcatttgcaattagactactataagtaaaaaaccaattattagaatcatttaactgtatattaacata |
318 |
Q |
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| T |
1370677 |
taacat-ct------------------aagctgcatttgcaattagactattataagtaaaaaaccaattattagaatcatttaactgtatattaacata |
1370597 |
T |
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| Q |
319 |
gagacatcaaatgacctttcacatcctgccctagaagagacattagagcccaaaccacagcatcaagatgctccgatgactccgctaaaagaatcaagtc |
418 |
Q |
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| T |
1370596 |
gagacatcaaatgacctttcacatcctgccctagaagagacattagagtccaaaccacagcatcaagatgctccaatgactccgctaaaagaatcaagtc |
1370497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 34613624 - 34613669
Alignment:
| Q |
141 |
tttctcaccttatctctaagaaagttcataaccttttcacgaataa |
186 |
Q |
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| T |
34613624 |
tttctcaccttatctctaacaaaatttataaccttttcacgaataa |
34613669 |
T |
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