View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_61 (Length: 249)
Name: NF9288_low_61
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_61 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 10761559 - 10761305
Alignment:
| Q |
1 |
aaaatgcttatgttgctagagacattgatactaggtatcgggtccatgagcgtgtctgcaagctggtgataatccttttatgatcacatctaatagtaat |
100 |
Q |
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| T |
10761559 |
aaaatgcttatgttgctagagacattgatactaggtatcgggtccatgagcgtgtctgcaagctggtgataatccttttatgatcacatctaatagtaat |
10761460 |
T |
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| Q |
101 |
gtcattcttgcaactttaattcttgaaatgtatgcaaa-----------------atgcaagaagtgaaacatttttgcttggaaatgttaccatggtga |
183 |
Q |
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| T |
10761459 |
gtcattcttgcaactttaattcttgaaatgtatgcaaaatgcggtagcttgaaaaatgcaagaagtgaaacatttttgcttggaaatgttaccatggtga |
10761360 |
T |
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| Q |
184 |
atattgattaatgcttatagtcaatatgagagggatagcaagccgcttgatctct |
238 |
Q |
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| T |
10761359 |
atattgattaatgcttatagtcaatatgagagggatagcaagccgcttgatctct |
10761305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 4 - 238
Target Start/End: Complemental strand, 10739214 - 10738962
Alignment:
| Q |
4 |
atgcttatgttgctagagacattgatactaggtatcgggtccatgagcgtgtctgcaag-ctggtgataatccttttatgatcacatctaatagtaatgt |
102 |
Q |
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| T |
10739214 |
atgcttatgttgctagagacattgatactaggaatcgggtccatcagcgtgtctgcaaggctggtgataatccttttatgatcacatctaatagtaatgt |
10739115 |
T |
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| Q |
103 |
cattcttgcaactttaattcttgaaatgtatgcaaaa-----------------tgcaagaagtgaaacatttttgcttggaaatgttaccatggtgaat |
185 |
Q |
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| T |
10739114 |
cattcttgcaactttacttcttgaaatgtatgcaaaatgcggtagcttgaaaattgcaagaagtgaaacatttttgcttggaaatgttaccatggtgaat |
10739015 |
T |
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| Q |
186 |
attgattaatgcttatagtcaatatgagagggatagcaagccgcttgatctct |
238 |
Q |
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| T |
10739014 |
attgattaatgcttatagtcaatatgagagggatagcaagccgcttgatctct |
10738962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 10606395 - 10606488
Alignment:
| Q |
49 |
agcgtgtctgcaag-ctggtgataatccttttatgatcacatctaatagtaatgtcattcttgcaactttaattcttgaaatgtatgcaaaatg |
141 |
Q |
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| T |
10606395 |
agcgtgtctgcaaggctggtgataatccttttatggtcacatctaatactagtatcattcttgcaactttcattcttgaaatgtatgcaaaatg |
10606488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 10606531 - 10606624
Alignment:
| Q |
145 |
gaagtgaaacatttttgcttggaaatgttaccatggtgaatattgattaatgcttatagtcaatatgagagggatagcaagccgcttgatctct |
238 |
Q |
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| T |
10606531 |
gaagagaaacatttttgcttggaaatgttattgtgatgaatattgattaatgcttatagtcaatatgagaggcatagcaaaccacttgagctct |
10606624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 10608144 - 10608199
Alignment:
| Q |
86 |
acatctaatagtaatgtcattcttgcaactttaattcttgaaatgtatgcaaaatg |
141 |
Q |
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| T |
10608144 |
acatctgattgtaatgacattcttgcaacttcaattcttgaaatgtatgcagaatg |
10608199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 9807811 - 9807759
Alignment:
| Q |
89 |
tctaatagtaatgtcattcttgcaactttaattcttgaaatgtatgcaaaatg |
141 |
Q |
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| T |
9807811 |
tctaatagtaatgttattcttgcaactgctattgttgaaatgtatgcgaaatg |
9807759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 12903595 - 12903665
Alignment:
| Q |
71 |
aatccttttatgatcacatctaatagtaatgtcattcttgcaactttaattcttgaaatgtatgcaaaatg |
141 |
Q |
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| T |
12903595 |
aatccttttatggccacatctatttttaatttcattcttgcaacttccattcttgaaacatatgcaaaatg |
12903665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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