View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_65 (Length: 241)
Name: NF9288_low_65
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 40885631 - 40885855
Alignment:
| Q |
1 |
caacatatcccagtggatactatccccctccatcagggtcctactatcagaattttgatccctatcaaaattatgatccttattttggtcctcagactca |
100 |
Q |
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| T |
40885631 |
caacatatcccagtggatactatccccctccatcagggtcctactatcagaattttgatccctatcaaaattatgatccttattttggtcctcagactca |
40885730 |
T |
|
| Q |
101 |
tggttatcctccatataacaattattatatgtaaaacagatggatctatcaccactccaacagtatagtattagtatcactgttggtgtttttgtgnnnn |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40885731 |
tggttatcctccatataacaattattatatgtaaaacagatggatgttgcaccactccaacagtatagtattagtatcactgttggtgtttttgtg-ttt |
40885829 |
T |
|
| Q |
201 |
nnnattaagtcctttgtattggtatt |
226 |
Q |
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||||||||||||||||||||||| |
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| T |
40885830 |
tttattaagtcctttgtattggtatt |
40885855 |
T |
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