View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_66 (Length: 241)
Name: NF9288_low_66
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 53674872 - 53674648
Alignment:
| Q |
1 |
cagtaggtggtggtttagtggaggaagccaagtcaatttctgctgattttcttcttcttcttggcggaacaagaaacaaaacgaataagtaagaactcat |
100 |
Q |
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| T |
53674872 |
cagtaggtggtggtttagtggaggaagccaagtcaatttctgctgattttcttcttcttcttggcggaacaagaaacaaaacaattaagtaagaactcat |
53674773 |
T |
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| Q |
101 |
cagtgtaacatttattcaaatcatttataaagatctaagcatttgacaaccccctttatcattttttatagaattggcacctctaaaggaattaccaagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
53674772 |
cagtgtaacatttattcaaatcatttataaagatctaagcatttgacaaccccctttatcattgtttatagaattggcacctctaaaggaattaccaatt |
53674673 |
T |
|
| Q |
201 |
attgctttgagcatgtgcatgaagg |
225 |
Q |
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| T |
53674672 |
attgctttgagcatgtgcatgaagg |
53674648 |
T |
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