View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_69 (Length: 239)
Name: NF9288_low_69
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_69 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 32936806 - 32937015
Alignment:
| Q |
13 |
catcaagtctaaaacttgcaattacaaagcagggaattcaatgtaccagaaataaatttagtatacattatctatatatgctaaatatagatagcattca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32936806 |
catcaagtctaaaacttgcaattacaaagcagggaattcaatgtaccagaaataaatttagtatacattatctatatatgctaaatatagatggcattca |
32936905 |
T |
|
| Q |
113 |
tcaacctataacttatgtcaaccaagtgataataaaaggcaatgaaaaggaaaaatccaatatgctctttttcaatggaacagttatctggcatcggata |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
32936906 |
tcaacctataacttatgtcaaccaagtgataataaaaggcaatgaaaaggaaaaatccaatatgctctttttcaatggaacagttatccggcatcagata |
32937005 |
T |
|
| Q |
213 |
caagcattct |
222 |
Q |
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|||||||||| |
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| T |
32937006 |
caagcattct |
32937015 |
T |
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