View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_70 (Length: 238)
Name: NF9288_low_70
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_70 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 31702209 - 31701985
Alignment:
| Q |
1 |
tcctgtatacatgaaataatgtgacaaaggagcttccatatcatgatgtacctgcaatgagatacataa-ttgtttttcatattattagttaggactaaa |
99 |
Q |
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| T |
31702209 |
tcctgtatacatgaaataatgtgacaaaggagcttccatatcatgatgtacctgcaatgagatacataaattgtttttcatattattagtcaggactaaa |
31702110 |
T |
|
| Q |
100 |
agttaagctgttagatttttaataaaatttgacattctcctcctcatcattttaacaatttttaacctccattgagaatttacatactcaataaaaataa |
199 |
Q |
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| T |
31702109 |
agttaagctgttagatttttaataaaatttgacattctcctcctcatcattttaacaatttttaacctccattgagaatttacatactcaataaaaataa |
31702010 |
T |
|
| Q |
200 |
tctagttttgtattaagaagaatat |
224 |
Q |
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||||||||||||||||||||||||| |
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| T |
31702009 |
tctagttttgtattaagaagaatat |
31701985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 31651980 - 31651862
Alignment:
| Q |
1 |
tcctgtatacatgaaataatgtgacaaaggagcttccatatcatgatgtacctgcaatgagatacataattgtttttcatattattagttaggactaaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31651980 |
tcctgtatacatgaaataatgtgacaaaggagctttcatatcatgatgtacctgcaatgagatacataattgtttttcatattattagttaggactaaaa |
31651881 |
T |
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| Q |
101 |
gttaagctgttagattttt |
119 |
Q |
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| T |
31651880 |
gttaagctgttagattttt |
31651862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 31651835 - 31651787
Alignment:
| Q |
114 |
atttttaataaaatttgacattctcctcctcatcattttaacaattttt |
162 |
Q |
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| T |
31651835 |
atttttaataaaattttacattctcctcttcatcgttttaataattttt |
31651787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 35507765 - 35507706
Alignment:
| Q |
1 |
tcctgtatacatgaaataatgtgacaaaggagcttccatatcatgatgtacctgcaatga |
60 |
Q |
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||||||||| ||||||||||||||||| ||||| ||||||||||| |||||| ||||| |
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| T |
35507765 |
tcctgtatatatgaaataatgtgacaatggagcactcatatcatgatttacctgtaatga |
35507706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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