View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_71 (Length: 235)
Name: NF9288_low_71
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_71 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 10761539 - 10761762
Alignment:
| Q |
1 |
ctctagcaacataagcattttcttcaattccatatttcactatgcaactatgaatacaatttccacattgttgatcaggaataacagaagtttttgaaac |
100 |
Q |
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| T |
10761539 |
ctctagcaacataagcattttcttcaattccatatttcactatgcaactatgaatacaatttccacattgttgatcaggaataacagaagtttttgaaac |
10761638 |
T |
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| Q |
101 |
aaactccccatatggtttttctgtatattagatttagaaattaacttgtgattattatatgctcactataaatatatagaagcaatttcaaatgtttgct |
200 |
Q |
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| T |
10761639 |
aaactccccatatggtttttctgtatattagatttagaaattaacttgtgattattatatgctcactataaatatatagaagcaatttcaaatgtttgct |
10761738 |
T |
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| Q |
201 |
ttctgttaaattttgggttgtttt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
10761739 |
ttctgttaaattttgggttgtttt |
10761762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 10739197 - 10739420
Alignment:
| Q |
1 |
ctctagcaacataagcattttcttcaattccatatttcactatgcaactatgaatacaatttccacattgttgatcaggaataacagaagtttttgaaac |
100 |
Q |
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|||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10739197 |
ctctagcaacataagcatctgcttcaattctatatttcactatgcaactatgaatacaatttccacattgttgatcaggaataacagaagtttttgaaac |
10739296 |
T |
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| Q |
101 |
aaactccccatatggtttttctgtatattagatttagaaattaacttgtgattattatatgctcactataaatatatagaagcaatttcaaatgtttgct |
200 |
Q |
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| T |
10739297 |
aaattccccatatggtttttctgtgtattagatttataaattaaattgtgattattatatgcacactataaatatatagaagcaatttgaaatgtttgct |
10739396 |
T |
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| Q |
201 |
ttctgttaaattttgggttgtttt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
10739397 |
ttctgttaaattttgggttgtttt |
10739420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 8 - 216
Target Start/End: Complemental strand, 10606192 - 10605980
Alignment:
| Q |
8 |
aacataagcattttcttcaattccatatttcactatgcaactatgaatacaatttccacattgttgatcaggaataacagaagtttttgaaacaaactcc |
107 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||| ||| ||| || |
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| T |
10606192 |
aacataagaattttcctcaattccatatttcactatgcaactatgaatacaatttccacaatgtttatcaggaataacataagttttgtaaagaaatccc |
10606093 |
T |
|
| Q |
108 |
ccatatggttt----ttctgtatattagatttagaaattaacttgtgattattatatgctcactataaatatatagaagcaatttcaaatgtttgctttc |
203 |
Q |
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||||| | ||| |||||||| | ||||||| |||| | |||| |||||||||||||| |||| |||||||||||||||||| ||||||||| |||| |
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| T |
10606092 |
ccataggtttttttcttctgtatgtcagatttataaatgcaattgtaattattatatgctcgctatgaatatatagaagcaatttgaaatgtttgatttc |
10605993 |
T |
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| Q |
204 |
tgttaaattttgg |
216 |
Q |
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| T |
10605992 |
ttataaattttgg |
10605980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 10607559 - 10607486
Alignment:
| Q |
151 |
attattatatgctcactataaatatatagaagcaatttcaaatgtttgctttctgttaaattttgggttgtttt |
224 |
Q |
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||||||||||||||||||| ||||||||||||||| | | | ||||||||||| |||||||||||| ||||| |
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| T |
10607559 |
attattatatgctcactatgaatatatagaagcaaactaataagtttgctttcttataaattttgggtggtttt |
10607486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 10613973 - 10613895
Alignment:
| Q |
146 |
ttgtgattattatatgctcactataaatatatagaagcaatttcaaatgtttgctttctgttaaattttgggttgtttt |
224 |
Q |
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|||| ||||||||||||||| ||| ||||||||||||||| || | |||||||| |||| || |||||||||||||| |
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| T |
10613973 |
ttgttattattatatgctcagtatgaatatatagaagcaaattgatatgtttgccttctcatattttttgggttgtttt |
10613895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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