View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_8 (Length: 454)
Name: NF9288_low_8
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 438
Target Start/End: Original strand, 41390691 - 41391116
Alignment:
| Q |
16 |
acaacaaaaaatcaccatcatcccaattcaatcaatgtttgtttctatctacacccctcattttactggtggcaccccacttcct---cctcctcctcca |
112 |
Q |
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| T |
41390691 |
acaacaaaaaatcaccatcatcccaattcaatcaatgtttgtttctatctacacccctcattttactggtggcaccccacttcctcctcctcctcctcca |
41390790 |
T |
|
| Q |
113 |
ttaatcattcatcttcatctacttcaacaaccatgaaacttttgaacccaaacccatttcccttttcttctcaatctcagacccaacatatggaacaaca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41390791 |
ttaatcattcatcttcatctacttcaacaaccatgaaacttttgaacccaaacccatttcccttttcttctcaatctcagacccaacatatggaacaaca |
41390890 |
T |
|
| Q |
213 |
atcttcacctacaaaccttaaagttcatattgctgttggtaaatcacttcacaaaaccaccactttgcttcaatggacttttaaccactttcaaaacgct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41390891 |
atcttcacctacaaaccttaaagttcatattgctgttggtaaatcacttcacaaaaccaccactttgcttcaatggacttttaaccactttcaaaacgct |
41390990 |
T |
|
| Q |
313 |
gaaattgtattaattcatgtttatcaaccttctccttttatacccactttgtgtaagctcaatttcttcactttttaattatgtggcaccgacacttctg |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
41390991 |
gaaattgtattaattcatgtttatcaaccttctccttttatacccactttgtgtaagctcaatttcttcactttttaattatgtgacactgacacttctg |
41391090 |
T |
|
| Q |
413 |
attaaatgcgtacgtcgctgtccaac |
438 |
Q |
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|| ||||| || |||||||||||| |
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| T |
41391091 |
atcaaatgtgtttctcgctgtccaac |
41391116 |
T |
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