View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288_low_82 (Length: 211)

Name: NF9288_low_82
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288_low_82
NF9288_low_82
[»] chr2 (12 HSPs)
chr2 (14-195)||(8380083-8380264)
chr2 (33-195)||(30394060-30394222)
chr2 (33-195)||(30383931-30384093)
chr2 (15-195)||(30424085-30424265)
chr2 (42-195)||(30482837-30482990)
chr2 (15-195)||(30468078-30468258)
chr2 (42-195)||(30436363-30436516)
chr2 (51-195)||(30430154-30430298)
chr2 (15-195)||(30475207-30475387)
chr2 (56-184)||(23767675-23767803)
chr2 (46-184)||(23784276-23784414)
chr2 (56-184)||(23796844-23796972)
[»] chr5 (1 HSPs)
chr5 (26-195)||(41628350-41628519)
[»] chr8 (4 HSPs)
chr8 (43-184)||(15860290-15860431)
chr8 (78-184)||(15852929-15853035)
chr8 (43-167)||(15846118-15846242)
chr8 (43-183)||(15866678-15866818)


Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 8380264 - 8380083
Alignment:
Q  14 cacagatcatggcaccaagtttcctcacaagttgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatg 113  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||    
T  8380264 cacagatcatggcaccaagtttcctcacaagttgcattgatatgattagcaaatgggagtcaacgttgtcatcagatggatcaggtgaaatagacatatg 8380165  T
Q  114 gccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaagaaggaaaaagaatattt 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8380164 gccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaagaaggaaaaagaatattt 8380083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 33 - 195
Target Start/End: Original strand, 30394060 - 30394222
Alignment:
Q  33 tttcctcacaagttgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttg 132  Q
    |||| |||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||| ||||||||||| ||||||||||||| |||||||||    
T  30394060 tttcttcacaagttgcaatgatatgattagcaaatgggaggaaatgttgtcttcagatggatcatgtgaaatagacgtatggccttccctgcagaatttg 30394159  T
Q  133 acaagtgatgttatttctcgaaacgcatttggaagtagttacgaagaaggaaaaagaatattt 195  Q
     ||||||||| |||||||||||  || |||||||||||||| |||||||||||||||||||||    
T  30394160 gcaagtgatgctatttctcgaactgcgtttggaagtagttatgaagaaggaaaaagaatattt 30394222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 33 - 195
Target Start/End: Original strand, 30383931 - 30384093
Alignment:
Q  33 tttcctcacaagttgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttg 132  Q
    |||| |||||||||||| |||| |||||| ||||||||||  ||  |||||||||||||||||| |||||||||| |||||||||||||| || ||||||    
T  30383931 tttcttcacaagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttg 30384030  T
Q  133 acaagtgatgttatttctcgaaacgcatttggaagtagttacgaagaaggaaaaagaatattt 195  Q
     ||||||||| ||||||||||| ||||||||||||||| || |||||||||||||||||||||    
T  30384031 gcaagtgatgctatttctcgaaccgcatttggaagtagctatgaagaaggaaaaagaatattt 30384093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 30424085 - 30424265
Alignment:
Q  15 acagatcatggcaccaagtttcctcacaagttgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatgg 114  Q
    ||||||||||  |||||  | ||||| |||||||  |||| |||||||||||||||||  ||  ||| |||||||||||||| ||||||| ||| |||||    
T  30424085 acagatcatgttaccaatatacctcaaaagttgcgatgatctgattagcaaatgggagaaaatgttggcttcagatggatcatgtgaaatggacgtatgg 30424184  T
Q  115 ccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaagaaggaaaaagaatattt 195  Q
    |||| ||| || |||||| | ||||||||||||||||||   ||||||||||||||||| ||||| |||||||||||||||    
T  30424185 cctttccttcaaaatttggcgagtgatgttatttctcgagctgcatttggaagtagttatgaagagggaaaaagaatattt 30424265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 42 - 195
Target Start/End: Original strand, 30482837 - 30482990
Alignment:
Q  42 aagttgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgat 141  Q
    |||||||| ||||||||||||||||||||||| ||  || || | |||||||||| ||||||| ||  ||||||||||| | || |||||| | ||||||    
T  30482837 aagttgcaatgatatgattagcaaatgggagggaatgttatcattagatggatcatgtgaaattgatgtatggccttccattcaaaatttggctagtgat 30482936  T
Q  142 gttatttctcgaaacgcatttggaagtagttacgaagaaggaaaaagaatattt 195  Q
    |||||| ||||||  ||||||||||||||||| |||||||||| || |||||||    
T  30482937 gttattgctcgaacagcatttggaagtagttatgaagaaggaataaaaatattt 30482990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 30468078 - 30468258
Alignment:
Q  15 acagatcatggcaccaagtttcctcacaagttgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatgg 114  Q
    ||||||||||  |||||  |||| || |||||||  |||| |||||||||||||||||  ||  ||||| |||||||||||| ||||||| ||| |||||    
T  30468078 acagatcatgttaccaatattccacaaaagttgcgatgatctgattagcaaatgggagaaaatgttgtcgtcagatggatcatgtgaaatggacgtatgg 30468177  T
Q  115 ccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaagaaggaaaaagaatattt 195  Q
    |||| ||| || |||||  | ||||||||||||||||||   || |||||||||||||| ||||| |||||||||||||||    
T  30468178 cctttccttcaaaattttgccagtgatgttatttctcgagcagcgtttggaagtagttatgaagagggaaaaagaatattt 30468258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 42 - 195
Target Start/End: Original strand, 30436363 - 30436516
Alignment:
Q  42 aagttgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgat 141  Q
    |||||||  |||| |||||||||||||||||  ||  ||||| |||||||||||| ||||||| ||| ||||||||| ||| || |||||| | ||||||    
T  30436363 aagttgcgatgatttgattagcaaatgggagaaaatgttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaatttggccagtgat 30436462  T
Q  142 gttatttctcgaaacgcatttggaagtagttacgaagaaggaaaaagaatattt 195  Q
     |||||||||||   || |||||||||||||| ||||| |||||||||||||||    
T  30436463 cttatttctcgagcagcgtttggaagtagttatgaagagggaaaaagaatattt 30436516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 51 - 195
Target Start/End: Original strand, 30430154 - 30430298
Alignment:
Q  51 tgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgttatttct 150  Q
    |||| |||||||||||||||||  ||  ||| |||||||||||||| ||||||| ||  ||||||||| ||| || |||||  |||| ||||||||||||    
T  30430154 tgatctgattagcaaatgggagaaaatgttggcttcagatggatcatgtgaaatggaagtatggcctttccttcaaaatttagcaagagatgttatttct 30430253  T
Q  151 cgaaacgcatttggaagtagttacgaagaaggaaaaagaatattt 195  Q
    |||   ||||||||||||||||| ||||| |||||||||||||||    
T  30430254 cgagctgcatttggaagtagttatgaagagggaaaaagaatattt 30430298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 30475207 - 30475387
Alignment:
Q  15 acagatcatggcaccaagtttcctcacaagttgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatgg 114  Q
    ||||||||||  ||||| |||| ||| ||||||   |||| |||||| ||||||||||  ||  ||||| |||||||||||| ||||| | ||  | |||    
T  30475207 acagatcatgttaccaattttcttcaaaagttgtgatgatttgattaccaaatgggagagaatgttgtcatcagatggatcatgtgaattggatgtttgg 30475306  T
Q  115 ccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaagaaggaaaaagaatattt 195  Q
    |||| ||| || |||||| | ||||||||||||||| |||  ||||||||||||||||| ||||| |||||||||||||||    
T  30475307 cctttccttcaaaatttggcgagtgatgttatttctagaacagcatttggaagtagttatgaagagggaaaaagaatattt 30475387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 56 - 184
Target Start/End: Original strand, 23767675 - 23767803
Alignment:
Q  56 tgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgttatttctcgaaa 155  Q
    |||||||||| ||||| | ||| ||||||||| |||||||   |||||||||||||||||||||||| ||||  |||||||||||||||||  ||||       
T  23767675 tgattagcaattgggaagaaacgttgtcttcaaatggatcctctgaaatagacatatggccttcccttcagagcttgacaagtgatgttatcgctcgttc 23767774  T
Q  156 cgcatttggaagtagttacgaagaaggaa 184  Q
      |||||||||||||||| ||||||||||    
T  23767775 gtcatttggaagtagttatgaagaaggaa 23767803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 23784414 - 23784276
Alignment:
Q  46 tgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgtta 145  Q
    |||| |||| |||||||||| |||||   ||  ||||||||| |||||||| ||||||| ||| ||||||||||||| ||||  ||||||||||||||||    
T  23784414 tgcaatgatttgattagcaattgggaaaaaatgttgtcttcaaatggatcatgtgaaatggacgtatggccttcccttcagagcttgacaagtgatgtta 23784315  T
Q  146 tttctcgaaacgcatttggaagtagttacgaagaaggaa 184  Q
    |  ||||     |||||||||||||||| ||||||||||    
T  23784314 tcgctcgttcgtcatttggaagtagttatgaagaaggaa 23784276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 56 - 184
Target Start/End: Original strand, 23796844 - 23796972
Alignment:
Q  56 tgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgttatttctcgaaa 155  Q
    |||||||||| ||||| | ||| |||||||||  |||| |   |||||||||||||||||||||||| ||||  |||||||||||||||||  ||||       
T  23796844 tgattagcaattgggaagaaacgttgtcttcaagtggagcctctgaaatagacatatggccttcccttcagagcttgacaagtgatgttatcgctcgttc 23796943  T
Q  156 cgcatttggaagtagttacgaagaaggaa 184  Q
      |||||||||||||||| ||||||||||    
T  23796944 gtcatttggaagtagttatgaagaaggaa 23796972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 41628519 - 41628350
Alignment:
Q  26 caccaagtttcctcacaagttgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatggccttccctaca 125  Q
    |||||| |||| ||||||||||||  ||| | ||||| |||||||||| ||  |||||| ||||||||||| |||||||||| |||||||||||||| ||    
T  41628519 caccaactttcttcacaagttgcaacgatttaattagaaaatgggaggaaatgttgtctccagatggatcatgtgaaatagatatatggccttcccttca 41628420  T
Q  126 gaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaagaaggaaaaagaatattt 195  Q
    ||||||| | |||||||||||||||||||   |||| ||||||||||| |||||||||| ||||||||||    
T  41628419 gaatttggcgagtgatgttatttctcgaacaacattcggaagtagttatgaagaaggaagaagaatattt 41628350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 184
Target Start/End: Complemental strand, 15860431 - 15860290
Alignment:
Q  43 agttgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatg 142  Q
    ||||||| ||| ||||| ||||||||| ||| |  |||||| ||||||||| || |||| || ||  | ||||||||||| |||||||| ||  ||||||    
T  15860431 agttgcaatgaaatgataagcaaatggaagggattattgtcatcagatggaacatgtgagattgatgtttggccttcccttcagaattttacctgtgatg 15860332  T
Q  143 ttatttctcgaaacgcatttggaagtagttacgaagaaggaa 184  Q
    | |||||||| |  ||||||||||| || |||| ||||||||    
T  15860331 taatttctcggacagcatttggaagcagctacgcagaaggaa 15860290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 15853035 - 15852929
Alignment:
Q  78 attgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaa 177  Q
    |||||| ||||||||| || |||| || ||  | ||||||| ||| |||||||||||  ||||||| |||||||| |  ||||||||||| || |||| |    
T  15853035 attgtcatcagatggaacatgtgagattgatgtttggcctttccttcagaatttgacgtgtgatgtaatttctcggacagcatttggaagcagctacgca 15852936  T
Q  178 gaaggaa 184  Q
    |||||||    
T  15852935 gaaggaa 15852929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 15846242 - 15846118
Alignment:
Q  43 agttgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatg 142  Q
    ||||||| ||| ||||| ||||||||| ||| |  |||||| ||||||||| || ||||  | ||  | ||||||| ||| |||||||||||  ||||||    
T  15846242 agttgcaatgaaatgataagcaaatggaagggattattgtcatcagatggaacatgtgagcttgatgtttggcctttccttcagaatttgacctgtgatg 15846143  T
Q  143 ttatttctcgaaacgcatttggaag 167  Q
    | |||||| |||  |||||||||||    
T  15846142 taatttctagaacagcatttggaag 15846118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 183
Target Start/End: Complemental strand, 15866818 - 15866678
Alignment:
Q  43 agttgcactgatatgattagcaaatgggaggcaacattgtcttcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatg 142  Q
    ||||||| ||| |||||||| |||||| ||| |  |||||| ||||||||| || ||||  | ||  | ||||||| ||| |||||||| ||  ||||||    
T  15866818 agttgcaatgaaatgattagtaaatggaaggaactattgtcatcagatggaacatgtgaggttgatgtttggcctttccttcagaattttacctgtgatg 15866719  T
Q  143 ttatttctcgaaacgcatttggaagtagttacgaagaagga 183  Q
    | |||||||| |  ||||||||||| || |||| |||||||    
T  15866718 taatttctcggacggcatttggaagcagctacgcagaagga 15866678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University