View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_84 (Length: 207)
Name: NF9288_low_84
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_84 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 24 - 192
Target Start/End: Original strand, 16298525 - 16298693
Alignment:
| Q |
24 |
gtggctgtgatgatgagcaaccagcatcagctgcatttgcagatccttctccaacagatattttttgaaactctacacatattcaagtatacaaattttt |
123 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16298525 |
gtggctgtgatgatgagcaaccagcagcagctgcatttgcagatccttctccaacagatattttttgaaactctacacatattcaagtatacaaattttt |
16298624 |
T |
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| Q |
124 |
agaatcatttaaacttattatatggctgttgtttagcaataatnnnnnnntttcacctgctatgatgtc |
192 |
Q |
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| T |
16298625 |
agaatcatttaaatttattatatggctgttgtttagcaataataaaaatatttcacctgctatgatgtc |
16298693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 9e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 24 - 192
Target Start/End: Original strand, 22896021 - 22896189
Alignment:
| Q |
24 |
gtggctgtgatgatgagcaaccagcatcagctgcatttgcagatccttctccaacagatattttttgaaactctacacatattcaagtatacaaattttt |
123 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22896021 |
gtggttgtgatgatgagcaaccagcagcagctgcatttgcagatccttctccaacagatattttttgaaactctacacatattcaagtatacaaattttt |
22896120 |
T |
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| Q |
124 |
agaatcatttaaacttattatatggctgttgtttagcaataatnnnnnnntttcacctgctatgatgtc |
192 |
Q |
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| T |
22896121 |
agaatcatttaaatttattatatggatgttgtttagcaataataaaaatatttcacctgctatgatgtc |
22896189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 14429042 - 14428922
Alignment:
| Q |
24 |
gtggctgtgatgatgagcaaccagcatcagctgcatttgcagatccttctccaacagatattttttgaaactctacacatattcaagtatacaaattttt |
123 |
Q |
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|||||||||||||||| ||||||||||| | ||||| || ||| |||||||||| ||||| || |||||| |||| | ||||||||||| | |||| |
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| T |
14429042 |
gtggctgtgatgatgaacaaccagcatc---tccattttcatatcattctccaacatatattcttcgaaactatacaaaaattcaagtataaattttttc |
14428946 |
T |
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| Q |
124 |
agaatcatttaaacttattatatg |
147 |
Q |
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||||||||| ||| |||||||||| |
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| T |
14428945 |
agaatcattaaaatttattatatg |
14428922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 36237021 - 36236964
Alignment:
| Q |
70 |
ttctccaacagatattttttgaaactctacacatattcaagtatacaaatttttagaa |
127 |
Q |
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||||||||| ||||| ||| |||||||||| |||||||||||||||| ||||||||| |
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| T |
36237021 |
ttctccaacgtatattctttaaaactctacaaatattcaagtatacaattttttagaa |
36236964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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