View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9289_high_4 (Length: 283)
Name: NF9289_high_4
Description: NF9289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9289_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 6 - 266
Target Start/End: Complemental strand, 36282809 - 36282549
Alignment:
| Q |
6 |
gtttggtggtgctatagactagctatatgtaaaatgtaaagtaggagagnnnnnnnagttagttaggaaatgaagaggcatgtacacaaagaggaagagg |
105 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36282809 |
gtttggcggtgctatagactagctatatgtaaaatgtaaagtaggagagtttttttaattagttaggaaatgaagaggcatgtacacaaagaggaagagg |
36282710 |
T |
|
| Q |
106 |
attacaattctctcatgaaaattttgtcgacttttctccattttcaatctacatggttaaaatgctcctacgacttttcttagtaattcaactttagttt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
36282709 |
attacaattctctcatgaaaattttgtcgacttttctccattttcaatctacatggttaaaatgctcctactacttttcttagtaatttaactttagttt |
36282610 |
T |
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| Q |
206 |
tctctcatatgtttgaaggttgagatttcatttaagaaaaattgagagaacccaaattctt |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36282609 |
tctctcatatgtttgaaggttgagatttcatttaagaaaaattgagagaatccaaattctt |
36282549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 45235079 - 45235027
Alignment:
| Q |
203 |
ttttctctcatatgtttgaaggttgagatttcatttaagaaaaattgagagaa |
255 |
Q |
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||||||||| ||||||||| ||||||||||||| || |||||| ||||||||| |
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| T |
45235079 |
ttttctctcttatgtttgatggttgagatttcacttgagaaaacttgagagaa |
45235027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 12906624 - 12906665
Alignment:
| Q |
214 |
atgtttgaaggttgagatttcatttaagaaaaattgagagaa |
255 |
Q |
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|||||||| |||||||||| |||||||||||| ||||||||| |
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| T |
12906624 |
atgtttgatggttgagattacatttaagaaaacttgagagaa |
12906665 |
T |
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