View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9289_low_12 (Length: 295)
Name: NF9289_low_12
Description: NF9289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9289_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 279
Target Start/End: Original strand, 28674405 - 28674670
Alignment:
| Q |
14 |
agattgataagccaagttgaactatcacagaaactaaaggatgaacttggttacacgcttaatgttaaaccttctcaaatatctcacaaggacgctggcc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28674405 |
agattgataagccaagttgaactatcacagaaactaaaggatgaacttggttacacgcttaatgttaaaccttctcaaatatctcacaaggacgctggcc |
28674504 |
T |
|
| Q |
114 |
aaggtctatttttagatggtgtagtagatgttggtgctgtagtagccttttatcctggtgtagtctactctccagcttattatcatcatattcctggata |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28674505 |
aaggtctatttttagatggtgtagtagatgttggtgctgtagtagccttttatcctggtgtagtctactctccagcgtattatcatcatattcctggata |
28674604 |
T |
|
| Q |
214 |
tcttgatgagcagaacccctatttgattacaagacatgatgggaatgtcattgacgcccaactttg |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28674605 |
tcttgatgagcagaacccctatttgattacaagacatgatgggaatgtcattgacgcccaactttg |
28674670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 207
Target Start/End: Original strand, 13907378 - 13907564
Alignment:
| Q |
21 |
taagccaagttgaactatcacagaaactaaaggatgaacttggttacacgcttaatgttaaaccttctcaaatatctcacaaggacgctggccaaggtct |
120 |
Q |
| |
|
||||||||| |||| | || |||||| |||| ||| ||||||| | ||| ||| ||||||||||||||||||||||||||||||| || || | ||||| |
|
|
| T |
13907378 |
taagccaagctgaagtttctcagaaattaaaagatcaacttggcttcacacttgatgttaaaccttctcaaatatctcacaaggatgccggacggggtct |
13907477 |
T |
|
| Q |
121 |
atttttagatggtgtagtagatgttggtgctgtagtagccttttatcctggtgtagtctactctccagcttattatcatcatattcc |
207 |
Q |
| |
|
|| ||||||||||| | ||||||||| |||| || || |||||||||||||| |||||||||||||||||||||| | ||||||| |
|
|
| T |
13907478 |
tttcttagatggtgttgcggatgttggttctgtggtggcattttatcctggtgtggtctactctccagcttattatcgttatattcc |
13907564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University