View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9289_low_19 (Length: 249)

Name: NF9289_low_19
Description: NF9289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9289_low_19
NF9289_low_19
[»] chr1 (6 HSPs)
chr1 (18-235)||(14789470-14789687)
chr1 (30-209)||(14879939-14880118)
chr1 (30-202)||(14757245-14757417)
chr1 (30-184)||(14874678-14874832)
chr1 (30-197)||(14769459-14769626)
chr1 (18-82)||(36307170-36307234)
[»] scaffold0042 (1 HSPs)
scaffold0042 (30-182)||(91636-91788)
[»] chr8 (1 HSPs)
chr8 (17-126)||(14857586-14857695)
[»] chr7 (5 HSPs)
chr7 (18-110)||(47240835-47240927)
chr7 (18-110)||(47296266-47296358)
chr7 (40-110)||(47255809-47255879)
chr7 (40-110)||(47300858-47300928)
chr7 (40-110)||(47282162-47282232)
[»] chr5 (1 HSPs)
chr5 (40-110)||(32729522-32729592)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 14789687 - 14789470
Alignment:
Q  18 gattgtaatgatgaaggtattttgtttattgaagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgcatagatg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||    
T  14789687 gattgtaatgatgaaggtattttgtttattgaagctgatgctgatgttactcttgaacaatttggtgaagatcttcatcctccatttccttgcatagatg 14789588  T
Q  118 agcttctttatgatgttcctggttcttcagttgtgcttaacactccattgctgcttattcaggtataatattgatcttctcacactagatatcttattgg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  14789587 agcttctttatgatgttcctggttcttcagttgtgcttaacactccattgctgcttattcaggtataatattgatcttctcatactagatatgttattgg 14789488  T
Q  218 aggaatttgaattctctg 235  Q
    ||||||||||||||||||    
T  14789487 aggaatttgaattctctg 14789470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 30 - 209
Target Start/End: Complemental strand, 14880118 - 14879939
Alignment:
Q  30 gaaggtattttgtttattgaagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgcatagatgagcttctttatg 129  Q
    |||||| |||||||||||||||||||||| |||||||||||| || | |||||||||||| |||||||||||||||||||| | |||||||||||||||     
T  14880118 gaaggtgttttgtttattgaagctgatgcagatgttactcttaaagagtttggtgatgctcttcatcctccatttccttgcttggatgagcttctttatt 14880019  T
Q  130 atgttcctggttcttcagttgtgcttaacactccattgctgcttattcaggtataatattgatcttctcacactagatat 209  Q
    |||||||||||||||||| |||| |||||||||||||| |||||||||||||||| |||||||||| |||| ||| ||||    
T  14880018 atgttcctggttcttcagatgtgattaacactccattgatgcttattcaggtatagtattgatcttttcaccctacatat 14879939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 30 - 202
Target Start/End: Original strand, 14757245 - 14757417
Alignment:
Q  30 gaaggtattttgtttattgaagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgcatagatgagcttctttatg 129  Q
    |||||| |||||||||||||||||||||| ||||||| | |  || |||||||||| | | |||||||||||||||||||||||||||||||||||||||    
T  14757245 gaaggtgttttgtttattgaagctgatgcagatgttagtttgaaagaatttggtgaagatcttcatcctccatttccttgcatagatgagcttctttatg 14757344  T
Q  130 atgttcctggttcttcagttgtgcttaacactccattgctgcttattcaggtataatattgatcttctcacac 202  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||  | | ||||||||||||    
T  14757345 atgttcctggttcttcagatatgcttaacactccattgctgcttattcaggtatagcaataatcttctcacac 14757417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 14874832 - 14874678
Alignment:
Q  30 gaaggtattttgtttattgaagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgcatagatgagcttctttatg 129  Q
    |||||| |||||||||||||||||||||| ||||||||  || || | || |||||| || ||||||||||||||| |||  | ||||| ||||||||||    
T  14874832 gaaggtgttttgtttattgaagctgatgcagatgttaccattaaagatttgggtgatactcttcatcctccatttcgttgtttggatgaacttctttatg 14874733  T
Q  130 atgttcctggttcttcagttgtgcttaacactccattgctgcttattcaggtata 184  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14874732 atgttcttggttcttcagatgtgcttaacactccattgctgcttattcaggtata 14874678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 30 - 197
Target Start/End: Complemental strand, 14769626 - 14769459
Alignment:
Q  30 gaaggtattttgtttattgaagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgcatagatgagcttctttatg 129  Q
    |||||| |||||||||||||||||||||| ||||||| | |  || |||||||||||||| |||| ||||| ||||||||  | ||||||||||||| ||    
T  14769626 gaaggtgttttgtttattgaagctgatgcagatgttagtttgaaagaatttggtgatgctcttcaacctccttttccttgtttggatgagcttctttttg 14769527  T
Q  130 atgttcctggttcttcagttgtgcttaacactccattgctgcttattcaggtataatattgatcttct 197  Q
    ||||||||||||||||||  |||||||||  ||||||| || | ||||||||||  |||||| |||||    
T  14769526 atgttcctggttcttcagaagtgcttaactgtccattgttggtgattcaggtattgtattgaacttct 14769459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 36307170 - 36307234
Alignment:
Q  18 gattgtaatgatgaaggtattttgtttattgaagctgatgctgatgttactcttgaacaatttgg 82  Q
    ||||||||||  |||||| || |||| ||||| || ||||||||||| || ||||||||||||||    
T  36307170 gattgtaatggagaaggtgttatgttcattgaggcagatgctgatgtaacacttgaacaatttgg 36307234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 91788 - 91636
Alignment:
Q  30 gaaggtattttgtttattgaagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgcatagatgagcttctttatg 129  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||| ||| | | ||||||| | ||||    
T  91788 gaaggtgttttgtttattgaagctgatgctgatgttactcttaaacaatttggtgatgcacttcatcctccatttccatgcttgggtgagcttatctatg 91689  T
Q  130 atgttcctggttcttcagttgtgcttaacactccattgctgcttattcaggta 182  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  91688 atgttcctggttcttcagatgttcttaacactccattgctgcttattcaggta 91636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 14857586 - 14857695
Alignment:
Q  17 agattgtaatgatgaaggtattttgtttattgaagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgcatagat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |  || |||||||||||||| |||| ||||| ||||||||  | |||    
T  14857586 agattgtaatgatgaaggtattttgtttattgaagctgatgctgatgttagtttgaaagaatttggtgatgctcttcaacctccttttccttgtttggat 14857685  T
Q  117 gagcttcttt 126  Q
    ||||||||||    
T  14857686 gagcttcttt 14857695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 47240835 - 47240927
Alignment:
Q  18 gattgtaatgatgaaggtattttgtttattgaagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgc 110  Q
    ||||||| || ||||||| |  |||| ||||||||||| |||||||| || ||||| ||||||||||||||| | ||||||||||| ||||||    
T  47240835 gattgtactggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgctctgcatcctccattcccttgc 47240927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 47296358 - 47296266
Alignment:
Q  18 gattgtaatgatgaaggtattttgtttattgaagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgc 110  Q
    ||||||| || ||||||| |  |||| ||||||||||| |||||||| || ||||| ||||||||||||||  | ||||||||||| ||||||    
T  47296358 gattgtactggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgccctgcatcctccattcccttgc 47296266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 47255809 - 47255879
Alignment:
Q  40 tgtttattgaagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgc 110  Q
    |||| ||||||||||| |||||| | || ||||| ||||||||||||||| | || |||||||||||||||    
T  47255809 tgttcattgaagctgaagctgatataacacttgatcaatttggtgatgctctgcaacctccatttccttgc 47255879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 47300928 - 47300858
Alignment:
Q  40 tgtttattgaagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgc 110  Q
    |||| ||||||||||| |||||||| || ||||| ||||||||||||||  | ||||||||||| ||||||    
T  47300928 tgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgccctgcatcctccattcccttgc 47300858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 47282162 - 47282232
Alignment:
Q  40 tgtttattgaagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgc 110  Q
    |||| ||||||||||| |||||||| || ||| |  |||||||||||||| ||||||| ||||| ||||||    
T  47282162 tgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttgc 47282232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 32729522 - 32729592
Alignment:
Q  40 tgtttattgaagctgatgctgatgttactcttgaacaatttggtgatgctgttcatcctccatttccttgc 110  Q
    |||| ||||||||||| |||||||| || ||||| ||||||||||||||| | ||||||||||| ||||||    
T  32729522 tgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgctctgcatcctccattcccttgc 32729592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University