View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9289_low_23 (Length: 233)

Name: NF9289_low_23
Description: NF9289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9289_low_23
NF9289_low_23
[»] chr6 (1 HSPs)
chr6 (13-223)||(17933283-17933494)
[»] chr3 (3 HSPs)
chr3 (13-223)||(32844307-32844520)
chr3 (119-196)||(23876952-23877029)
chr3 (121-169)||(25535250-25535298)
[»] chr8 (1 HSPs)
chr8 (130-188)||(11788405-11788463)
[»] chr7 (2 HSPs)
chr7 (119-184)||(366771-366836)
chr7 (119-188)||(7401966-7402035)
[»] chr1 (1 HSPs)
chr1 (134-184)||(42559898-42559948)
[»] chr5 (1 HSPs)
chr5 (119-184)||(27075893-27075958)


Alignment Details
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 17933283 - 17933494
Alignment:
Q  13 caaaggctaacaaaggtatgaatcacaaagtgtcaaaccnnnnnnnn-taggagtgaaacatcaacttcgtccttgagtttgtaaggactaatcaaattc 111  Q
    |||||||||||||||| ||||||||||||||||||||||         |||||||||||||||| |||||| |||||||||| ||||| |||||||||||    
T  17933283 caaaggctaacaaaggcatgaatcacaaagtgtcaaaccaaaaaaaaataggagtgaaacatcaccttcgttcttgagtttgcaaggattaatcaaattc 17933382  T
Q  112 gtcctttaattagtccctgaatttaacacacgtcagtcaaattcatccctctgtccaatctctctgttagtgatgctaatgtgtcaatgtgcatgatata 211  Q
    |||||  ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  17933383 gtcctccaattagtccctgaatttaacacatgtccgtcaaattcatccctctgtccaatctctctgttagtgatgctaatgtgtcaatgtgcatgatgtg 17933482  T
Q  212 ctgtgatgtcca 223  Q
     |||||||||||    
T  17933483 ttgtgatgtcca 17933494  T

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Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 32844520 - 32844307
Alignment:
Q  13 caaaggctaacaaaggtatgaatcacaaagtgtcaaaccnnnnnnnnta---ggagtgaaacatcaacttcgtccttgagtttgtaaggactaatcaaat 109  Q
    |||||||||||||||| ||||||||| ||||||||||||         |   ||| |||||||||||||||||||||||||||| ||||| |||||||||    
T  32844520 caaaggctaacaaaggcatgaatcactaagtgtcaaaccaaaaaaaaaaaaaggaatgaaacatcaacttcgtccttgagtttgcaaggattaatcaaat 32844421  T
Q  110 tcgtcctttaattagtccctgaatttaacacacgtcagtcaaattcatccctctgtccaatctctctgttagtgatgctaatgtgtcaatgtgcatgata 209  Q
    |||||||  ||||||||||| ||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  32844420 tcgtcctccaattagtccctaaatttaacacatgtccgtcaaattcatccctctgcccaatctctctgttagtgatgctaatgtgtcaatgtgcatgatg 32844321  T
Q  210 tactgtgatgtcca 223  Q
    | ||||||||||||    
T  32844320 tgctgtgatgtcca 32844307  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 23877029 - 23876952
Alignment:
Q  119 aattagtccctgaatttaacacacgtcagtcaaattcatccctctgtccaatctctctgttagtgatgctaatgtgtc 196  Q
    |||||||| |||||||||||| |||||  ||||||||||||||| |||||||| ||| |||||||| ||||| |||||    
T  23877029 aattagtctctgaatttaacaaacgtccatcaaattcatccctccgtccaatccctccgttagtgaggctaacgtgtc 23876952  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 25535298 - 25535250
Alignment:
Q  121 ttagtccctgaatttaacacacgtcagtcaaattcatccctctgtccaa 169  Q
    ||||||||||||||||||| |||||   |||||||||||||| ||||||    
T  25535298 ttagtccctgaatttaacagacgtccaccaaattcatccctccgtccaa 25535250  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 11788405 - 11788463
Alignment:
Q  130 gaatttaacacacgtcagtcaaattcatccctctgtccaatctctctgttagtgatgct 188  Q
    |||||||||| |||||  ||||||||||||||| ||||||| |||||||||||||||||    
T  11788405 gaatttaacagacgtccatcaaattcatccctccgtccaatatctctgttagtgatgct 11788463  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 366771 - 366836
Alignment:
Q  119 aattagtccctgaatttaacacacgtcagtcaaattcatccctctgtccaatctctctgttagtga 184  Q
    ||||||||||||||||||||| |||||  ||||||||||||||| |||||||| | | ||||||||    
T  366771 aattagtccctgaatttaacagacgtctatcaaattcatccctccgtccaatcccaccgttagtga 366836  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 7401966 - 7402035
Alignment:
Q  119 aattagtccctgaatttaacacacgtcagtcaaattcatccctctgtccaatctctctgttagtgatgct 188  Q
    |||| |||||||||||||||| |||||  ||||||||||| |||  |||||| |||| ||||||||||||    
T  7401966 aattcgtccctgaatttaacagacgtccatcaaattcatcactccatccaatatctccgttagtgatgct 7402035  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 42559948 - 42559898
Alignment:
Q  134 ttaacacacgtcagtcaaattcatccctctgtccaatctctctgttagtga 184  Q
    |||||| |||||  ||||||||||||||| |||||||||||||||||||||    
T  42559948 ttaacagacgtccatcaaattcatccctccgtccaatctctctgttagtga 42559898  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 27075893 - 27075958
Alignment:
Q  119 aattagtccctgaatttaacacacgtcagtcaaattcatccctctgtccaatctctctgttagtga 184  Q
    ||||||| ||||||||||||| |||||  ||||||||||||||| || ||||| | | ||||||||    
T  27075893 aattagttcctgaatttaacagacgtccatcaaattcatccctccgttcaatccccccgttagtga 27075958  T

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