View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9289_low_3 (Length: 575)
Name: NF9289_low_3
Description: NF9289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9289_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 331 - 556
Target Start/End: Original strand, 31261933 - 31262158
Alignment:
| Q |
331 |
tttcatcatcaaaatcaacattttcaccattaccatttccaactacgaaagttaacaaaagatggaaagaataccaaggtatgaccaattgggaaggttt |
430 |
Q |
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| T |
31261933 |
tttcatcatcaaaatcaacattttcaccattaccatttccaactacaaaagttaacaaaagatggaaagaataccaaggtatgaccaattgggaaggttt |
31262032 |
T |
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| Q |
431 |
attagacccattagacaataatcttcgttccgaaatccttcgttatggccattttgttgaagctgcatataaatcctttgaatttgatccttcttcatca |
530 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
31262033 |
attagacccattagacaataatcttcgttccgaaatccttcgttatggccattttgttgaagctgcatataaatcctttgaattcgacccttcttcatca |
31262132 |
T |
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| Q |
531 |
aactatgccacaaacaagttccccaa |
556 |
Q |
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| T |
31262133 |
aactatgccacaaacaagttccccaa |
31262158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 31261603 - 31261862
Alignment:
| Q |
1 |
ctcaatcacaacaagtgcactctttctctctctgnnnnnnnncccctataaaatcttcatcactcactcataaatttccctcgtaannnnnnnnnnnnnn |
100 |
Q |
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| T |
31261603 |
ctcaatcacaacaagtgccctctttctctctctgttttttttcccctataaaatcttcatcactcactcataaatttccctcgtaaaacaaacaacaacg |
31261702 |
T |
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| Q |
101 |
nnnnnnnntatagcaaagtagcaaacttccctcattcatttccattctcaacactctttctcactcaccaatcacaatgacatccttaaaccacactaca |
200 |
Q |
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| T |
31261703 |
tacacacatatagcaaagtagcaaacttccctcattcatttccattctcaacactctttctcactcaccaatcacaatgacatccttaaaccacactaca |
31261802 |
T |
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| Q |
201 |
tcccacatttctttccccaaaaccacaaccttcactatcaaaccacaatgcataacactt |
260 |
Q |
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| T |
31261803 |
tcccacatttctttccccaaaaccacaaccttcactatcaaaccacaatgcataacactt |
31261862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 462 - 523
Target Start/End: Original strand, 31304136 - 31304197
Alignment:
| Q |
462 |
gaaatccttcgttatggccattttgttgaagctgcatataaatcctttgaatttgatccttc |
523 |
Q |
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|||||||| || ||||||||||||||||||||| | |||||||| ||||| ||||||||||| |
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| T |
31304136 |
gaaatcctacgctatggccattttgttgaagctacgtataaatcatttgagtttgatccttc |
31304197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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