View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9289_low_8 (Length: 319)
Name: NF9289_low_8
Description: NF9289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9289_low_8 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 319
Target Start/End: Original strand, 4589865 - 4590174
Alignment:
| Q |
10 |
gcagagaaactgaaacaaataaaagggaaggatgcaaattggatataacatggaatacgaatgggtacttataacaggacttaggcaggaacatacatag |
109 |
Q |
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| T |
4589865 |
gcagagaaactgaaacaaataaaagggaaggatgcaaattggatataacatggaatacgaatgggtacttataacaggacttaggcaggaacatacatag |
4589964 |
T |
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| Q |
110 |
gagggaatgatactatgtttggcggttgagaatttgacgtaggttttgttattgttgcaacctattttagtaatttaccaatcatagcagaaataaattc |
209 |
Q |
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| T |
4589965 |
gagggaatgatactatggttggcggttgagaatttgacgtaggttttgttattgttgcaacctattttagtaatttaccaatcatagcagaaataaattc |
4590064 |
T |
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| Q |
210 |
ctgtcctgaatgctttacttgtttttagtttgttgacagaccagtgagaattcgagagtcgtctaatttttacctaagcaacaatttttcgtgttggttt |
309 |
Q |
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| T |
4590065 |
ctgtcctgaatgctttacttgtttttagtttgttgacagaccagggagaattcgagagtcgtctaatttttacctaagcaacaacttttcgtgttggttt |
4590164 |
T |
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| Q |
310 |
aaagattttc |
319 |
Q |
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| T |
4590165 |
aaagattttc |
4590174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 137 - 271
Target Start/End: Original strand, 4603637 - 4603770
Alignment:
| Q |
137 |
gagaatttgacgtaggttttgttattgttgcaacctattttagtaatttaccaatcatagcagaaataaattcctgtcctgaatgctttacttgttttta |
236 |
Q |
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| T |
4603637 |
gagaatttgacataggctctgttatttttccaac-tattttagtattttaccaatcatagcagaattaaattactatcctgaatgctttacttgttttta |
4603735 |
T |
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| Q |
237 |
gtttgttgacagaccagtgagaattcgagagtcgt |
271 |
Q |
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| T |
4603736 |
atttgtcgacaggtcagtgagaattcgagaatcgt |
4603770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 319
Target Start/End: Original strand, 4603991 - 4604054
Alignment:
| Q |
256 |
agaattcgagagtcgtctaatttttacctaagcaacaatttttcgtgttggtttaaagattttc |
319 |
Q |
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| T |
4603991 |
agaattcgagaatcgtctagtttttccctaaacaacaactttttgtgaaggtttaaagattttc |
4604054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 183 - 274
Target Start/End: Original strand, 595552 - 595643
Alignment:
| Q |
183 |
tttaccaatcatagcagaaataaattcctgtcctgaatgctttacttgtttttagtttgttgacagaccagtgagaattcgagagtcgtcta |
274 |
Q |
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| T |
595552 |
tttaccaatcatagcaaaaatggattactgtcttgattgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgtcta |
595643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 595442 - 595483
Alignment:
| Q |
8 |
gagcagagaaactgaaacaaataaaagggaaggatgcaaatt |
49 |
Q |
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| T |
595442 |
gagcagagaaacagaaacaaataaaaaagaaggatgcaaatt |
595483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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