View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9290_high_14 (Length: 341)

Name: NF9290_high_14
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9290_high_14
NF9290_high_14
[»] chr3 (4 HSPs)
chr3 (15-325)||(1580676-1580988)
chr3 (15-129)||(3663915-3664028)
chr3 (230-278)||(3664098-3664146)
chr3 (34-129)||(41404343-41404438)
[»] chr1 (2 HSPs)
chr1 (15-325)||(32984062-32984377)
chr1 (15-263)||(3290213-3290462)
[»] chr7 (3 HSPs)
chr7 (15-325)||(39827738-39828052)
chr7 (15-323)||(30464638-30464951)
chr7 (15-278)||(8161040-8161299)
[»] chr2 (3 HSPs)
chr2 (15-255)||(17140051-17140293)
chr2 (58-278)||(31392072-31392294)
chr2 (15-201)||(9259694-9259882)
[»] chr6 (1 HSPs)
chr6 (15-277)||(35091986-35092256)


Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 325
Target Start/End: Complemental strand, 1580988 - 1580676
Alignment:
Q  15 catcaaagactccctaaagctctgctaaatatgcattacatctacccaagctatgggaaaagccactaatccactttccttcagcgtttcgaaaaagccc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  1580988 catcaaagactccctaaagctctgctaaatatgcattacatctacccaagctacgggaaaagccactaatccactttccttcagcgtttcgaaaaagctc 1580889  T
Q  115 tccactaccagctgagttatct--tttactagccccatctgtattcaaccaaattcaatcgtcctccgatttcttctacataacatcaatttccactcga 212  Q
    |||| ||||| |||||||||||  |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  1580888 tccattaccaactgagttatctcttttactagccccatctgtattcaaccaaatccaatcgtcctccggtttcttctacataacatcaatttccactcga 1580789  T
Q  213 tgcttagtacgcccactcacaacactattatccgcttgcttatattgctgcacccaacccataatatgtcaagggtggctggagcgaattcgaacctcac 312  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  1580788 tgcttagtatgcccactcacaacactattatccgcttgcttatattgctgcacccaacccataatatgccaagggtggctggagcgaattcgagcctcac 1580689  T
Q  313 catgcacttctct 325  Q
    |||||||||||||    
T  1580688 catgcacttctct 1580676  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 3663915 - 3664028
Alignment:
Q  15 catcaaagactccctaaagctctgctaaatatgcattacatctacccaagctatgggaaaagccactaatccactttccttcagcgtttcgaaaaagccc 114  Q
    |||||||| ||||| |||||||| |||| || ||||||| |||||| ||| || |||||||||||||||||||||| |||||||| |||||||||| |||    
T  3663915 catcaaaggctccccaaagctctactaa-tacgcattacctctacctaagttacgggaaaagccactaatccacttcccttcagcatttcgaaaaatccc 3664013  T
Q  115 tccactaccagctga 129  Q
    |||||||| ||||||    
T  3664014 tccactacgagctga 3664028  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 3664098 - 3664146
Alignment:
Q  230 cacaacactattatccgcttgcttatattgctgcacccaacccataata 278  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  3664098 cacaacattattatccgcttgcttatattgttgcacccaacccataata 3664146  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 41404343 - 41404438
Alignment:
Q  34 ctctgctaaatatgcattacatctacccaagctatgggaaaagccactaatccactttccttcagcgtttcgaaaaagccctccactaccagctga 129  Q
    |||||||||||| || |||||| ||| |||| || | || || ||||||||||| ||||||||| | ||| ||||||||| |||||||| ||||||    
T  41404343 ctctgctaaatacgcgttacatttactcaagttacgagataaaccactaatccattttccttcaacattttgaaaaagccatccactactagctga 41404438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 15 - 325
Target Start/End: Complemental strand, 32984377 - 32984062
Alignment:
Q  15 catcaaagactccctaaagctctgctaaatatgcattacatctacccaagctatgggaaaagccactaatccactttccttcagcgtttcgaaaaagccc 114  Q
    |||||||||||||| |||||| ||||||||| |||||||||||||||||| || ||||||||||||||||||| ||||||||||| |||| |||||||||    
T  32984377 catcaaagactccccaaagctttgctaaatacgcattacatctacccaagttacgggaaaagccactaatccattttccttcagcatttcaaaaaagccc 32984278  T
Q  115 tccactaccagctgagttatct--tttactagccccatctgtattcaaccaaattcaatcgtcctccgatttcttctacataacatcaatttccactcga 212  Q
    ||||||||| |||||  |||||  |||||||||||||||| ||||||||| ||| ||| |||||||   ||||||| |||||| ||||| ||||||||||    
T  32984277 tccactaccggctgaaatatctcttttactagccccatctttattcaaccgaatccaaccgtcctctcgtttcttccacataatatcaacttccactcga 32984178  T
Q  213 tgcttagtacgcccactcacaacactattatccgcttgcttatattgctgcacccaacccataatatg---tcaagggtggctggagcgaattcgaacct 309  Q
    |||||| |  ||||||  |||||||||||||| |||||||||||||||||||||||| ||||||||     |||||||||| ||| ||||||||||  ||    
T  32984177 tgcttactttgcccaccgacaacactattatctgcttgcttatattgctgcacccaatccataatactacatcaagggtggttggggcgaattcgagtct 32984078  T
Q  310 caccatgcacttctct 325  Q
     |||||||||||||||    
T  32984077 taccatgcacttctct 32984062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 263
Target Start/End: Complemental strand, 3290462 - 3290213
Alignment:
Q  15 catcaaagactccctaaagctctgctaaatatgcattacatctacccaagctatgggaaaagccactaatccactttccttcagcgtttcgaaaaagccc 114  Q
    |||||||||||| | ||||||||||||||||  ||||||||||||||||| || || ||||| ||||||||||||| | || ||  |||| |||||||||    
T  3290462 catcaaagactctc-aaagctctgctaaatacacattacatctacccaagttacggaaaaagtcactaatccacttccttttaggatttcaaaaaagccc 3290364  T
Q  115 tccactaccagctgagttatct--tttactagccccatctgtattcaaccaaattcaatcgtcctccgatttcttctacataacatcaatttccactcga 212  Q
    |||||||||||||||  |||||  ||||||| |  ||||||||||||||||||| ||| ||||||| | |||||||  ||| ||||||| ||||||| ||    
T  3290363 tccactaccagctgaaatatctcttttactaacttcatctgtattcaaccaaatccaaccgtcctcgggtttcttccgcatgacatcaacttccacttga 3290264  T
Q  213 tgcttagtacgcccactcacaacactattatccgcttgcttatattgctgc 263  Q
    ||||| ||| |||||  ||||||||||||||||||||||||||||||||||    
T  3290263 tgcttggtatgcccatccacaacactattatccgcttgcttatattgctgc 3290213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 15 - 325
Target Start/End: Original strand, 39827738 - 39828052
Alignment:
Q  15 catcaaagactccctaaagctctgctaaatatgcattacatctacccaagctatgggaaaagccactaatccactttccttcagcgtttcgaaaaagccc 114  Q
    |||||||||| ||  |||||||||||| ||||||||||||||||| |||| |  ||||||| |||||||||||||||||||| || ||||||||||| ||    
T  39827738 catcaaagacacctcaaagctctgctagatatgcattacatctacacaagttgcgggaaaaaccactaatccactttccttcggcatttcgaaaaagtcc 39827837  T
Q  115 tccactaccagctgagttatct--tttactagccccatctgtattcaaccaaattcaatcgtcctccgatttcttctacataacatcaatttccactcga 212  Q
    |||||||||||||||  |||||  ||||||||| |||||||||||||||| ||| ||| |||||||   ||||||| |||||||||||| ||||||||||    
T  39827838 tccactaccagctgaaatatctcttttactagcaccatctgtattcaaccgaatccaaccgtcctctagtttcttccacataacatcaacttccactcga 39827937  T
Q  213 tgcttagtacgcccactcacaacactattatccgcttgcttatattgctgcacccaacccataa---tatgtcaagggtggctggagcgaattcgaacct 309  Q
    ||||||||| || ||| ||||||||||||||||||||| || ||||| ||||||||||||||||   || | || |||||||||| |||||||||| | |    
T  39827938 tgcttagtatgctcacccacaacactattatccgcttg-ttttattgttgcacccaacccataatactacgccaggggtggctggggcgaattcgagcat 39828036  T
Q  310 caccatgcacttctct 325  Q
    ||||||||| ||||||    
T  39828037 caccatgcagttctct 39828052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 15 - 323
Target Start/End: Original strand, 30464638 - 30464951
Alignment:
Q  15 catcaaagactccctaaagctctgctaaatatgcattacatctacccaagctatgggaaaagccactaatccactttccttcagcgtttcgaaaaagccc 114  Q
    |||| ||||||||| |||||| ||||||||| |||||||||||| | ||| || |||||||||||| |||||||||||||||||| |||||||||| |||    
T  30464638 catccaagactccccaaagctttgctaaatacgcattacatctatcgaagttacgggaaaagccaccaatccactttccttcagcatttcgaaaaatccc 30464737  T
Q  115 tccactaccagctgagtta--tcttttactagccccatctgtattcaaccaaattcaatcgtcctccgatttcttctacataacatcaatttccactcga 212  Q
    |||||||||||||||  ||  |||||| || ||||||| ||||||||||| ||| ||| ||||||  | ||||||| |||||||||||| ||||||||||    
T  30464738 tccactaccagctgaaatatctcttttgctggccccatatgtattcaaccgaatccaaccgtcctttggtttcttccacataacatcaacttccactcga 30464837  T
Q  213 tgcttagtacgcccactcacaacactattatccgcttgcttatattgctgcacccaacccataatat---gtcaagggtggctggagcgaattcgaacct 309  Q
    ||||||||| |  ||| ||||||||||||||| ||||| ||||| |  ||||||||||| |||||||   | ||  |||| |||| ||||| || | |||    
T  30464838 tgcttagtatgttcacccacaacactattatctgcttgtttataattttgcacccaacctataatattacgccagaggtgtctggggcgaagtcaagcct 30464937  T
Q  310 caccatgcacttct 323  Q
    ||||||||||||||    
T  30464938 caccatgcacttct 30464951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 8161040 - 8161299
Alignment:
Q  15 catcaaagactccctaaagctctgctaaatatgcattacatctacccaagctatgggaaaagccactaatccactttccttcagcgtttcgaaaaagccc 114  Q
    |||| ||||||| | |||| ||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||  || ||||||||||||||    
T  8161040 catccaagactctccaaagttctgctaaatacgcattacatctacccaagttacgggaaaagccactaatccactttccttatgcatttcgaaaaagccc 8161139  T
Q  115 tccactaccagctgagtta--tcttttactagccccatctgtattcaaccaaattcaatcgtcctccgatttcttctacataacatca----atttccac 208  Q
    |||||||||| ||||  ||  ||||||||  ||||||| || |||||||          ||||||| | ||||||| |||||||||||    | ||||||    
T  8161140 tccactaccaactgaaatatctcttttaccggccccatttgcattcaac----------cgtcctctggtttcttccacataacatcaacttaattccac 8161229  T
Q  209 tcgatgcttagtacgcccactcacaacactattatccgcttgcttatattgctgcacccaacccataata 278  Q
    |||||||||| || |  ||| ||||||||||||||||||||| |||||||| || |||||||||||||||    
T  8161230 tcgatgcttaatatgttcacccacaacactattatccgcttgtttatattgttgtacccaacccataata 8161299  T

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Target: chr2 (Bit Score: 124; Significance: 9e-64; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 15 - 255
Target Start/End: Original strand, 17140051 - 17140293
Alignment:
Q  15 catcaaagactccctaaagctctgctaaatatgcattacatctacccaagctatgggaaaagccactaatccactttccttcagcgtttcgaaaaagccc 114  Q
    |||||||||||||  |||| |||| |||||| ||||||||||||| |||| ||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  17140051 catcaaagactccacaaagttctgataaatacgcattacatctactcaagttatgggaaaagccactaatccacttcccttcagcatttcgaaaaagccc 17140150  T
Q  115 tccactaccagctg--agttatcttttactagccccatctgtattcaaccaaattcaatcgtcctccgatttcttctacataacatcaatttccactcga 212  Q
    ||||||||||| ||  |  | ||||||||||||| ||||||||||||||| ||| ||| |  |||| | ||||||| |||||||||||| ||||||||||    
T  17140151 tccactaccagttggaatatctcttttactagccacatctgtattcaaccgaatccaaccaccctctggtttcttccacataacatcaacttccactcga 17140250  T
Q  213 tgcttagtacgcccactcacaacactattatccgcttgcttat 255  Q
    ||||||||| |||||| ||||| ||||| ||||||||||||||    
T  17140251 tgcttagtatgcccacccacaatactatcatccgcttgcttat 17140293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 58 - 278
Target Start/End: Complemental strand, 31392294 - 31392072
Alignment:
Q  58 acccaagctatgggaaaagccactaatccactttccttcagcgtttcgaaaaagccctccactaccagctgagttatct--tttactagccccatctgta 155  Q
    ||||||| ||| |||||||||| |||||||||| |||||| | ||| |||| | || |||||| |||||||   |||||  |||||||| ||||| ||||    
T  31392294 acccaagttatcggaaaagccaataatccacttcccttcatcattttgaaacaaccatccacttccagctggaatatctcttttactagacccatttgta 31392195  T
Q  156 ttcaaccaaattcaatcgtcctccgatttcttctacataacatcaatttccactcgatgcttagtacgcccactcacaacactattatccgcttgcttat 255  Q
    ||||||| ||| ||| | |||||   ||| |||||||||||| ||| |||  |||||||||||||| |||||| |||| |||||||||| || |||||||    
T  31392194 ttcaaccgaatccaaccatcctctagtttattctacataacaacaacttctgctcgatgcttagtatgcccacccacatcactattatctgcatgcttat 31392095  T
Q  256 attgctgcacccaacccataata 278  Q
    |||||||||||||||||||||||    
T  31392094 attgctgcacccaacccataata 31392072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 9259694 - 9259882
Alignment:
Q  15 catcaaagactccctaaagctctgctaaatatgcattacatctacccaagctatgggaaaagccactaatccactttccttcagcgtttcgaaaaagccc 114  Q
    |||||| ||||||| ||||||||  ||||||||||||||||||||||||| || || ||||  ||||||||||||| |||||| | ||||||||||||||    
T  9259694 catcaatgactccccaaagctcttttaaatatgcattacatctacccaagttacggaaaaaatcactaatccacttcccttcaacatttcgaaaaagccc 9259793  T
Q  115 tccactaccagctgagtta--tcttttactagccccatctgtattcaaccaaattcaatcgtcctccgatttcttctacataacatcaa 201  Q
    ||||||||| | |||  ||  ||||||||||||||||||||||||||||| ||| ||| | || ||   ||||||| ||||||||||||    
T  9259794 tccactaccggttgaaatatctcttttactagccccatctgtattcaaccgaatccaaccatcatctagtttcttccacataacatcaa 9259882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 15 - 277
Target Start/End: Original strand, 35091986 - 35092256
Alignment:
Q  15 catcaaagactccctaaagctctgctaaatatgcattacatctacccaagctatgggaaaagccactaatccactttccttcagcgtttcgaaaaag-cc 113  Q
    |||||||||||||| |||||| |||||||||   |||||||||||||||| ||  |||||| |||||||||||||| ||| |||| ||| ||||||| ||    
T  35091986 catcaaagactccccaaagctatgctaaatacatattacatctacccaagttactggaaaaaccactaatccacttccctccagcattttgaaaaagccc 35092085  T
Q  114 ctccactaccagctgagtta--tcttttactagccccatctgtattcaaccaaattcaatcgtcctccgatttcttctacataacatcaatttccactcg 211  Q
    | ||||||||||||||  ||  ||||||||||||| ||| || |||||||| ||| ||| |||| |  ||||||||| ||||||||| || || ||  ||    
T  35092086 ccccactaccagctgaaatatctcttttactagcctcatttgcattcaaccgaatccaaccgtcttatgatttcttccacataacatgaactttcatccg 35092185  T
Q  212 atgcttag----tacgccca-ctcacaacactattatccgcttgcttatattgctgcacccaacccataat 277  Q
    ||||||||    || ||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35092186 atgcttagtatatatgcccaccccacaacactattatccgcttgcttatattgctgcacccaacacataat 35092256  T

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