View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9290_high_19 (Length: 309)

Name: NF9290_high_19
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9290_high_19
NF9290_high_19
[»] chr3 (8 HSPs)
chr3 (2-294)||(25084978-25085268)
chr3 (2-285)||(24923419-24923702)
chr3 (5-259)||(24981989-24982243)
chr3 (1-269)||(24497234-24497502)
chr3 (5-253)||(24919877-24920125)
chr3 (17-268)||(31825533-31825784)
chr3 (5-259)||(21584582-21584836)
chr3 (222-263)||(14858629-14858670)
[»] chr7 (4 HSPs)
chr7 (2-256)||(10575327-10575581)
chr7 (2-251)||(39954838-39955087)
chr7 (2-204)||(354344-354547)
chr7 (2-170)||(10580727-10580895)
[»] chr8 (1 HSPs)
chr8 (8-259)||(14261017-14261268)
[»] chr2 (1 HSPs)
chr2 (2-228)||(41027512-41027738)
[»] chr4 (3 HSPs)
chr4 (2-251)||(53328654-53328903)
chr4 (2-234)||(22898493-22898725)
chr4 (2-234)||(22950161-22950393)
[»] chr5 (1 HSPs)
chr5 (5-243)||(26358549-26358787)


Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 2 - 294
Target Start/End: Original strand, 25084978 - 25085268
Alignment:
Q  2 aaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttgatctatgaag 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  25084978 aaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtagattggcgagaagaggtggtgtgaagagaatcagtggtttgatatatgaag 25085077  T
Q  102 aaaccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaagactgttaccgccatggatgt 201  Q
    ||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||    
T  25085078 aaaccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgt 25085177  T
Q  202 tgtctatgctttgaagagacaaggaagaaccctctatggtttcggaggttgaagaagacaaagaagaaacactctttagtttatatgttattt 294  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||| ||||||||    
T  25085178 tgtctatgctttgaagagacagggaagaaccctctatggttttggaggttgaagaagac--agaagaaacactctttagtttatttgttattt 25085268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 2 - 285
Target Start/End: Complemental strand, 24923702 - 24923419
Alignment:
Q  2 aaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttgatctatgaag 101  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24923702 aaggttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtggtttgatctatgaag 24923603  T
Q  102 aaaccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaagactgttaccgccatggatgt 201  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||| || || |||||||||||    
T  24923602 aaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgctgtgacatacactgagcacgcaaggaggaagacagtgacagccatggatgt 24923503  T
Q  202 tgtctatgctttgaagagacaaggaagaaccctctatggtttcggaggttgaagaagacaaagaagaaacactctttagtttat 285  Q
    ||||||||||||||||||||| ||||||||||||||||| || ||||||||||||| |  ||||||||||||||||||||||||    
T  24923502 tgtctatgctttgaagagacagggaagaaccctctatggatttggaggttgaagaatatgaagaagaaacactctttagtttat 24923419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 5 - 259
Target Start/End: Original strand, 24981989 - 24982243
Alignment:
Q  5 gttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttgatctatgaagaaa 104  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  24981989 gttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtggtttgatatatgaagaaa 24982088  T
Q  105 ccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaagactgttaccgccatggatgttgt 204  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  24982089 ccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgt 24982188  T
Q  205 ctatgctttgaagagacaaggaagaaccctctatggtttcggaggttgaagaaga 259  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24982189 ctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaaga 24982243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 24497502 - 24497234
Alignment:
Q  1 gaaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttgatctatgaa 100  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  24497502 gaaggttcttcgtgacaacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtggattgatctatgaa 24497403  T
Q  101 gaaaccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaagactgttaccgccatggatg 200  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||    
T  24497402 gaaaccagaggtgtcttgaagatcttcttggaaaatgtgatccgtgatgcagttacatacactgagcacgcaaggaggaagactgtgacagccatggatg 24497303  T
Q  201 ttgtctatgctttgaagagacaaggaagaaccctctatggtttcggaggttgaagaagacaaagaagaa 269  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| |||||    
T  24497302 ttgtctatgctttgaagagacaaggaagaaccctctatggttttggaggttgatgaagaaaaacaagaa 24497234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 253
Target Start/End: Complemental strand, 24920125 - 24919877
Alignment:
Q  5 gttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttgatctatgaagaaa 104  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24920125 gttcttcgtgataacatccagggtatcaccaagcctgcaattcgtcgattggcaagaagaggtggtgtgaagagaatcagcggtttgatctatgaagaaa 24920026  T
Q  105 ccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaagactgttaccgccatggatgttgt 204  Q
    ||||||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||| || ||||||||||| || || ||||||||||| ||    
T  24920025 ccagaggtgtcttgaagatcttcttagagaatgtcattcgtgatgctgtgacatacactgagcacgctaggaggaagacagtgacagccatggatgtcgt 24919926  T
Q  205 ctatgctttgaagagacaaggaagaaccctctatggtttcggaggttga 253  Q
    ||||||||||||||| || ||||||||||||||||| ||||||||||||    
T  24919925 ctatgctttgaagaggcagggaagaaccctctatggattcggaggttga 24919877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 31825784 - 31825533
Alignment:
Q  17 aacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttgatctatgaagaaaccagaggtgtct 116  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  31825784 aacatccagggtatcactaagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaactagaggtgtct 31825685  T
Q  117 tgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaagactgttaccgccatggatgttgtctatgctttgaa 216  Q
    |||||||||||||||| |||||||| |||||||| || |||||||||||||| || ||||||||||| |||||||| |||||||||||||||||||||||    
T  31825684 tgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaa 31825585  T
Q  217 gagacaaggaagaaccctctatggtttcggaggttgaagaagacaaagaaga 268  Q
    ||| || ||||||||||||||||| |||||||||||| |||||  |||||||    
T  31825584 gaggcagggaagaaccctctatggattcggaggttgatgaagaagaagaaga 31825533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 5 - 259
Target Start/End: Complemental strand, 21584836 - 21584582
Alignment:
Q  5 gttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttgatctatgaagaaa 104  Q
    ||||||||||||||||| ||||| ||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||    
T  21584836 gttcttcgtgataacattcagggaatcaccaagccagcgattcgtcgattggcgagaagaggtggtgttaagagaatcagtggtttgatttatgaggaaa 21584737  T
Q  105 ccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaagactgttaccgccatggatgttgt 204  Q
    | ||||| ||  | ||||| |||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| || || |||||||||||    
T  21584736 caagaggagttcttaagattttcttggagaatgtgattcgtgatgcggttacgtacactgagcatgcaaggaggaagactgtgactgctatggatgttgt 21584637  T
Q  205 ctatgctttgaagagacaaggaagaaccctctatggtttcggaggttgaagaaga 259  Q
     |||||||||||||| ||||||||||| || ||||| ||||||||||||||||||    
T  21584636 ttatgctttgaagaggcaaggaagaacgctttatggattcggaggttgaagaaga 21584582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 263
Target Start/End: Complemental strand, 14858670 - 14858629
Alignment:
Q  222 aaggaagaaccctctatggtttcggaggttgaagaagacaaa 263  Q
    |||||||||||||||| ||||| || ||||||||||||||||    
T  14858670 aaggaagaaccctctacggttttggtggttgaagaagacaaa 14858629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 2 - 256
Target Start/End: Original strand, 10575327 - 10575581
Alignment:
Q  2 aaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttgatctatgaag 101  Q
    |||||||| ||||| |||||||| || ||||| ||||| || |||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| |    
T  10575327 aaggttctccgtgacaacatccaaggaatcacaaagccagcgattcgtcgattggcgagaagaggaggtgtgaaaagaatcagtggattgatctatgagg 10575426  T
Q  102 aaaccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaagactgttaccgccatggatgt 201  Q
    |||| |||||||| ||||||||||||||||| ||||| ||  | ||||| ||||| |||||||||||||| |||||||| ||||| || || ||||||||    
T  10575427 aaacaagaggtgtgttgaagatcttcttggagaatgttataagagatgctgttacttacactgagcatgcgaggaggaaaactgtgactgctatggatgt 10575526  T
Q  202 tgtctatgctttgaagagacaaggaagaaccctctatggtttcggaggttgaaga 256  Q
    ||| || ||  | |||||||||||||||||||||||||||||||| |||||||||    
T  10575527 tgtttacgcgcttaagagacaaggaagaaccctctatggtttcggtggttgaaga 10575581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 39955087 - 39954838
Alignment:
Q  2 aaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttgatctatgaag 101  Q
    ||||||||||| || |||||||| || || ||||||||||| ||||||||  | |||||  | |||||||||||||||||||| ||| | ||||| ||||    
T  39955087 aaggttcttcgcgacaacatccaaggcataaccaagcctgcgattcgtcgtcttgcaaggcgtggtggtgtgaagagaatcagcggtctcatctacgaag 39954988  T
Q  102 aaaccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaagactgttaccgccatggatgt 201  Q
    | ||  | |||||  | ||||||||  | || ||||| ||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||    
T  39954987 agactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgt 39954888  T
Q  202 tgtctatgctttgaagagacaaggaagaaccctctatggtttcggaggtt 251  Q
    ||| |||||| | ||||| || ||||| || ||||| |||||||| ||||    
T  39954887 tgtgtatgctctcaagaggcagggaaggactctctacggtttcggtggtt 39954838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 2 - 204
Target Start/End: Original strand, 354344 - 354547
Alignment:
Q  2 aaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttga-tctatgaa 100  Q
    ||||||||| | | |||||| || || || || ||||| || |||||| ||||||| |||||||||||||||||||| ||||||||||| | |||||||     
T  354344 aaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgag 354443  T
Q  101 gaaaccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaagactgttaccgccatggatg 200  Q
    ||||  ||||| || |||||||| |||||| | ||||  ||| ||||||| ||||| ||||||||||||||||||||||||||| | || || |||||||    
T  354444 gaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcatgcaaggaggaagactctgactgctatggatg 354543  T
Q  201 ttgt 204  Q
    ||||    
T  354544 ttgt 354547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 170
Target Start/End: Original strand, 10580727 - 10580895
Alignment:
Q  2 aaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttgatctatgaag 101  Q
    ||||||||| | | |||||| || || || || ||||| || |||||| ||||||| ||||||| |||||||||||| |||||||||||||||||||| |    
T  10580727 aaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagagttggtgtgaagaggatcagtggtttgatctatgagg 10580826  T
Q  102 aaaccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatg 170  Q
    |||  |||||  | |||||||| |||||| | |||   |||| |||||| ||||| |||||||||||||    
T  10580827 aaataagaggactgttgaagattttcttgcagaataagattcttgatgctgttacttacactgagcatg 10580895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 14261268 - 14261017
Alignment:
Q  8 cttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttgatctatgaagaaacca 107  Q
    |||||||| |||||||| || ||||| ||||| || ||||| ||||| || |||||||| ||||||||||||||||| || ||||| |||||||||||      
T  14261268 cttcgtgacaacatccaaggaatcacaaagccagcgattcggcgattagcgagaagaggaggtgtgaagagaatcagcgggttgatttatgaagaaactc 14261169  T
Q  108 gaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaagactgttaccgccatggatgttgtcta 207  Q
    | ||||| |||||||| |||||||| ||||| ||  | ||||| ||||| || ||||| ||||| ||||||||||| ||||| || ||||||||||| ||    
T  14261168 gcggtgtgttgaagattttcttggagaatgtgataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgttta 14261069  T
Q  208 tgctttgaagagacaaggaagaaccctctatggtttcggaggttgaagaaga 259  Q
    ||| ||||||||||||||||| ||  | ||||||||||||||||||||||||    
T  14261068 tgcgttgaagagacaaggaaggactttgtatggtttcggaggttgaagaaga 14261017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 41027512 - 41027738
Alignment:
Q  2 aaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttgatctatgaag 101  Q
    ||||| |||||||||||||| || || || || |||||||| |||||||| |||||| | ||||| || |||||| | || || ||||||||||| ||||    
T  41027512 aaggtgcttcgtgataacattcaaggaattacgaagcctgcgattcgtcgtttggcacgtagaggaggagtgaagcgtataagcggtttgatctacgaag 41027611  T
Q  102 aaaccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaagactgttaccgccatggatgt 201  Q
    | ||  | || || ||||||||||| ||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || ||||||||    
T  41027612 agacacgtggcgtgttgaagatctttttggagaatgttattcgtgatgctgttacttacacagagcacgctaggagaaagactgttactgctatggatgt 41027711  T
Q  202 tgtctatgctttgaagagacaaggaag 228  Q
    ||| ||||| |||||||||||||||||    
T  41027712 tgtttatgcattgaagagacaaggaag 41027738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 53328654 - 53328903
Alignment:
Q  2 aaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttgatctatgaag 101  Q
    |||||||| || |||||||||||||| ||||| |||||||| ||||||||  | |||||| | |||||||||||| | |||||||| || ||||||||||    
T  53328654 aaggttctgcgcgataacatccagggaatcacaaagcctgcgattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaag 53328753  T
Q  102 aaaccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaagactgttaccgccatggatgt 201  Q
    ||||  | || ||  | ||||||||  | || ||||| ||||||||||| || |||||||| ||||||||  |  | ||||||||||| || ||||||||    
T  53328754 aaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgctgtcacatacacagagcatgctcgccgtaagactgttactgcaatggatgt 53328853  T
Q  202 tgtctatgctttgaagagacaaggaagaaccctctatggtttcggaggtt 251  Q
    ||| || ||| | ||||| || ||||| || || || |||||||| ||||    
T  53328854 tgtttacgctctcaagaggcagggaaggactctttacggtttcgggggtt 53328903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 234
Target Start/End: Original strand, 22898493 - 22898725
Alignment:
Q  2 aaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttgatctatgaag 101  Q
    ||||| |||||||| ||||||||||| || || ||||| || ||||||||  | ||  | ||||| || |||||| | |||||||||||||| ||||| |    
T  22898493 aaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtgaagcgtatcagtggtttgatttatgagg 22898592  T
Q  102 aaaccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaagactgttaccgccatggatgt 201  Q
    | ||  | || || |||||||| || ||||| ||||| ||| | ||||| || || ||||||||||| || || |||||||| ||||| || ||||||||    
T  22898593 agacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgt 22898692  T
Q  202 tgtctatgctttgaagagacaaggaagaaccct 234  Q
     || |||||  | |||||||| |||||||||||    
T  22898693 ggtttatgccctcaagagacagggaagaaccct 22898725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 234
Target Start/End: Original strand, 22950161 - 22950393
Alignment:
Q  2 aaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttgatctatgaag 101  Q
    ||||| |||||||| ||||||||||| || || ||||| || ||||||||  | ||  | ||||| || |||||| | |||||||||||||| ||||| |    
T  22950161 aaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtgaagcgtatcagtggtttgatttatgagg 22950260  T
Q  102 aaaccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaagactgttaccgccatggatgt 201  Q
    | ||  | || || |||||||| || ||||| ||||| ||| | ||||| || || ||||||||||| || || |||||||| ||||| || ||||||||    
T  22950261 agacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgt 22950360  T
Q  202 tgtctatgctttgaagagacaaggaagaaccct 234  Q
     || |||||  | |||||||| |||||||||||    
T  22950361 ggtttatgccctcaagagacagggaagaaccct 22950393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 243
Target Start/End: Complemental strand, 26358787 - 26358549
Alignment:
Q  5 gttcttcgtgataacatccagggtatcaccaagcctgccattcgtcgattggcaagaagaggtggtgtgaagagaatcagtggtttgatctatgaagaaa 104  Q
    |||||||| |||||||| ||||| || ||||| || || ||||||||  | |||||  | |||||||| ||  | ||||||||| |||||||||||||||    
T  26358787 gttcttcgagataacattcagggaattaccaaacccgcgattcgtcgtcttgcaaggcgtggtggtgtaaaacgtatcagtggtctgatctatgaagaaa 26358688  T
Q  105 ccagaggtgtcttgaagatcttcttggaaaatgtcattcgtgatgcagttacatacactgagcatgcaaggaggaagactgttaccgccatggatgttgt 204  Q
    |  | |||||  | ||||| ||  | || ||||| ||||||||||| || || |||||||| |||||  |  | || || ||||| || |||||||||||    
T  26358687 ctcgtggtgttctcaagatatttcttgagaatgttattcgtgatgctgtcacttacactgaacatgctcgtcgcaaaacagttactgctatggatgttgt 26358588  T
Q  205 ctatgctttgaagagacaaggaagaaccctctatggttt 243  Q
     |||||  | ||||| |||||||| ||||| ||||||||    
T  26358587 ttatgcgctcaagaggcaaggaaggaccctttatggttt 26358549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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