View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_high_23 (Length: 274)
Name: NF9290_high_23
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 72 - 264
Target Start/End: Original strand, 12136542 - 12136732
Alignment:
| Q |
72 |
actgggttcaaagacggacaaaggagtaaaaactaatcaaacaactaatgactaacattcaccaccattnnnnnnngttgatactaaaccctggggatgt |
171 |
Q |
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| T |
12136542 |
actgggttcaaagtcggacaaaggagtaaaaactaatcaaacaactaattactaacattaaccatta--aaaaaaagttgatactaaaccctggggatgt |
12136639 |
T |
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| Q |
172 |
taaacaaactgttaaaccaaaccaaaccacactgatttgaactaagggttaaagaagttgagattgttgagtcaacccccacagattgttggt |
264 |
Q |
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| T |
12136640 |
taaacaaactgttaaaccaaaccaaaccacactgatttgagctaagggttaaagaagttgagattgttgagtcaacccccacaaattgttggt |
12136732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 12135811 - 12135858
Alignment:
| Q |
21 |
cggaggggttggggttcgaaccccgacgaa--gtgtctggcatagcaa |
66 |
Q |
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| T |
12135811 |
cggaggggttggggttcgaaccccgacgaagtgtgtctggcatagcaa |
12135858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 16622656 - 16622600
Alignment:
| Q |
73 |
ctgggttcaaagacggacaaaggagtaaaaactaatcaaacaactaatgactaacatt |
130 |
Q |
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| T |
16622656 |
ctgggttcaaactcggataaaggag-aaaaactaatctaacaactaattactaacatt |
16622600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 36472662 - 36472607
Alignment:
| Q |
73 |
ctgggttcaaagacggacaaaggagtaaaaactaatcaaacaactaatgactaacat |
129 |
Q |
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| T |
36472662 |
ctgggttcaaacccggacaaaggaggaaaaactaatctaacaactaat-actaacat |
36472607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 6296900 - 6296956
Alignment:
| Q |
73 |
ctgggttcaaagacggacaaaggagtaaaaactaatcaaacaactaatgactaacatt |
130 |
Q |
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| T |
6296900 |
ctgggttcaaacccagacaaaggag-aaaaactaatctaacaactaattactaacatt |
6296956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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