View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_high_3 (Length: 544)
Name: NF9290_high_3
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 15 - 544
Target Start/End: Original strand, 48171270 - 48171799
Alignment:
| Q |
15 |
gttttgatggctgaaattgtgaagttaaggcagcagcagcataattcaagggagcaattatctgctatggaagctaggttgttggttactgagaagaaac |
114 |
Q |
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| T |
48171270 |
gttttgatggctgaaattgtgaagttaaggcagcagcagcataattcaagggagcaattatctgctatggaagctaggttgttggttactgagaagaaac |
48171369 |
T |
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| Q |
115 |
atcaacagatgatgaatttccttgcaaaagcacttagcaatcaatcttttatacaacaattggcacggaatagagagttgaaatgcgttgaaatgaagcg |
214 |
Q |
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| T |
48171370 |
atcaacagatgatgaatttccttgcaaaagcactcagcaatcaatcttttatacaacaattggcacagaatagagagttgaaaggcgttgaaatgaagcg |
48171469 |
T |
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| Q |
215 |
aaaacggaggctcacagctaattcgagtttggagaatttgcaaattgattctggagctataagggctgtgccaattgaatctgtggtcgattactcttgt |
314 |
Q |
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| T |
48171470 |
aaaacggaggctcacagctagtttgagtttggagaatttgcaaaatgattctggagctataagggctgtgccaattgaatctgtggttgattactcttgt |
48171569 |
T |
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| Q |
315 |
caagaacagcaagagggtttgactactattgagtctgagatggagacactgttaagtgcttatgataatgaatcaagcagtgaagttaaggactacactg |
414 |
Q |
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| T |
48171570 |
caagaacagcaagagggtttgactactattgagtctgagatggagacactgttaagtgcttatgataatgaatcaagcagtgaagttaaggactacactg |
48171669 |
T |
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| Q |
415 |
cattgagttcagttccaactggtaatgagagtaatttgggcgatgctgtgtgggaggatttactgaaccaagagttggtgggtgggaatccagaagatga |
514 |
Q |
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| T |
48171670 |
cattgagttcagttccaactggtaatgagagtaatttgggtgatgctgtgtgggaggatttactgaaccaagagttggtgggtgggaatccagaagatga |
48171769 |
T |
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| Q |
515 |
agttgtgattggtgatttctctcaaattga |
544 |
Q |
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| T |
48171770 |
agttgtgattggtgatttctctcaaattga |
48171799 |
T |
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