View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9290_high_34 (Length: 237)

Name: NF9290_high_34
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9290_high_34
NF9290_high_34
[»] chr2 (14 HSPs)
chr2 (1-221)||(9328932-9329152)
chr2 (14-221)||(9321325-9321529)
chr2 (13-213)||(9292279-9292473)
chr2 (89-161)||(9357604-9357676)
chr2 (88-221)||(9316448-9316581)
chr2 (104-166)||(10348227-10348289)
chr2 (103-166)||(10372305-10372368)
chr2 (97-162)||(10336273-10336338)
chr2 (103-213)||(10353556-10353666)
chr2 (97-161)||(9283827-9283891)
chr2 (97-206)||(7115231-7115340)
chr2 (103-156)||(9274947-9275000)
chr2 (97-161)||(9060772-9060836)
chr2 (1-62)||(9283923-9283984)
[»] chr4 (1 HSPs)
chr4 (103-163)||(26575308-26575368)
[»] chr3 (2 HSPs)
chr3 (97-163)||(37462927-37462993)
chr3 (20-64)||(37462853-37462897)
[»] scaffold0667 (1 HSPs)
scaffold0667 (97-166)||(4912-4981)
[»] chr8 (1 HSPs)
chr8 (97-159)||(41966362-41966424)
[»] chr1 (2 HSPs)
chr1 (98-159)||(29467429-29467489)
chr1 (103-159)||(29423703-29423759)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 9328932 - 9329152
Alignment:
Q  1 gtagggcatagcaggaataattttccaagagtttgttttagagttgaagagtctgacatgtggaacaaaagaggatctttcatttggatcggctatccaa 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9328932 gtagggcatagcaggaattattttccaagagtttgttttagagttgaagagtctgacatgtggaacaaaagaggatctttcatttggatcggctatccaa 9329031  T
Q  101 gcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataaggagaagcgacggatgttgtcagattcaagaatgttag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9329032 gcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataaggagaagcgatggatgttgtcagattcaagaatgttag 9329131  T
Q  201 ggatagcaagaggtaggaaag 221  Q
    |||||||||||||||||||||    
T  9329132 ggatagcaagaggtaggaaag 9329152  T

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Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 9321325 - 9321529
Alignment:
Q  14 ggaataattttccaagagtttgttttagagttgaagagtctgacatgtggaacaaaagaggatctttcatttggatcggctatccaagcgattctgagga 113  Q
    ||||| |||||||| ||||||||| ||||| |||||||||||||||||| | || || | ||  | |    ||||  ||||| ||||| |||||||||||    
T  9321325 ggaattattttccacgagtttgttatagagctgaagagtctgacatgtgaatcataaaaagagttgtg---tggagaggctaaccaagagattctgagga 9321421  T
Q  114 gtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataaggagaagcgacggatgttgtcagattcaagaatgttagggatagcaagagg 213  Q
    |||||||||| |||| ||||||||||||||||||||| |||||||||||| || |||||  ||||||||| ||||| | ||||| |||||||| ||||||    
T  9321422 gtttgtaatcgccggttaaaggatcaaaaccgaaaccatgaacgcataagcagcagcgattgatgttgtcggattccataatgtcagggataggaagagg 9321521  T
Q  214 taggaaag 221  Q
    ||||||||    
T  9321522 taggaaag 9321529  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 9292279 - 9292473
Alignment:
Q  13 aggaataattttccaagagtttgttttagagttgaagagtctgacatgtggaacaaaagaggatctttcatttggatcggctatccaagcgattctgagg 112  Q
    |||||| |||||||| ||||| ||||| ||| |||||||||| || |||||| |||||||| |      || | | ||||||||||||| ||||||||||    
T  9292279 aggaatgattttccacgagttagttttggagctgaagagtctcacctgtggatcaaaagagta------atgtaggtcggctatccaagagattctgagg 9292372  T
Q  113 agtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataaggagaagcgacggatgttgtcagattcaagaatgttagggatagcaagag 212  Q
    ||||||||||| |||| ||| |||||| ||||||| |||||||||||||    |  ||||   ||||| ||||| || ||||||||||||||||||||||    
T  9292373 agtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacaccggcgcgatcaatgttttcagactcgagaatgttagggatagcaagag 9292472  T

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Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 9357604 - 9357676
Alignment:
Q  89 tcggctatccaagcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcata 161  Q
    ||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||    
T  9357604 tcggctatccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 9357676  T

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Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 221
Target Start/End: Original strand, 9316448 - 9316581
Alignment:
Q  88 atcggctatccaagcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataaggagaagcgacggatgttgtcagat 187  Q
    |||||| |||||||  ||||||||||||||||||||||| | | | |||||||||||||| |||||||||||||    |  ||||  |   |||||||||    
T  9316448 atcggccatccaagaaattctgaggagtttgtaatcacctgttgatggatcaaaaccgaagccgtgaacgcatataccgccgcgattgggtttgtcagat 9316547  T
Q  188 tcaagaatgttagggatagcaagaggtaggaaag 221  Q
    |||||||||||||||||||||||||| |||||||    
T  9316548 tcaagaatgttagggatagcaagaggaaggaaag 9316581  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 10348227 - 10348289
Alignment:
Q  104 attctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataaggag 166  Q
    ||||||||||||||||||||||||||||   ||||||||||||| ||||||||||||||||||    
T  10348227 attctgaggagtttgtaatcaccggatatttgatcaaaaccgaagccgtgaacgcataaggag 10348289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 10372305 - 10372368
Alignment:
Q  103 gattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataaggag 166  Q
    ||||||||||||||||| ||| |||||||||| |||||||||||| || |||||||||||||||    
T  10372305 gattctgaggagtttgtgatcgccggataaagaatcaaaaccgaagccatgaacgcataaggag 10372368  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 10336273 - 10336338
Alignment:
Q  97 ccaagcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataa 162  Q
    ||||| |||||||||||||||||||||  ||||||| | |||||||||||| ||||||||||||||    
T  10336273 ccaagagattctgaggagtttgtaatcggcggataatgaatcaaaaccgaatccgtgaacgcataa 10336338  T

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Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 213
Target Start/End: Original strand, 10353556 - 10353666
Alignment:
Q  103 gattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataaggagaagcgacggat---gttgtcagattcaagaatgtta 199  Q
    ||||||||||||||||||||| ||||||| || |||||||||||| || ||||||||||   || ||| |||| |   |||||||||||  |||||||||    
T  10353556 gattctgaggagtttgtaatcgccggatacagaatcaaaaccgaagccatgaacgcata---agcagccacggttagggttgtcagattggagaatgtta 10353652  T
Q  200 gggatagcaagagg 213  Q
    ||||||| ||||||    
T  10353653 gggataggaagagg 10353666  T

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Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 9283891 - 9283827
Alignment:
Q  97 ccaagcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcata 161  Q
    ||||| ||||| ||||||||||||||| |||| |||||||||||||||||| ||||||| |||||    
T  9283891 ccaagagattcggaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaatgcata 9283827  T

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Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 206
Target Start/End: Complemental strand, 7115340 - 7115231
Alignment:
Q  97 ccaagcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataaggagaagcgacggatgttgtcagattcaagaatg 196  Q
    ||||| ||||||||| |||||||||||| | | |||||||||||||||||| ||||||| |||||     |||| |  |||| ||||||||| || ||||    
T  7115340 ccaagagattctgagaagtttgtaatcatctgttaaaggatcaaaaccgaagccgtgaaagcatagacctaagccattgatgatgtcagattgaataatg 7115241  T
Q  197 ttagggatag 206  Q
    ||||||||||    
T  7115240 ttagggatag 7115231  T

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Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 9274947 - 9275000
Alignment:
Q  103 gattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaac 156  Q
    ||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||    
T  9274947 gattctgagaagtttataatcgccggataaaggatcaaaaccaaaaccgtgaac 9275000  T

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Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 9060836 - 9060772
Alignment:
Q  97 ccaagcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcata 161  Q
    ||||| |||||||||||||||||||||  |||  || |||||||||||||| |||||||||||||    
T  9060836 ccaagtgattctgaggagtttgtaatcggcggtgaatggatcaaaaccgaagccgtgaacgcata 9060772  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 9283984 - 9283923
Alignment:
Q  1 gtagggcatagcaggaataattttccaagagtttgttttagagttgaagagtctgacatgtg 62  Q
    ||||||||||  |||||| |||||||| ||||||||||| ||| ||||||||||| ||||||    
T  9283984 gtagggcataataggaattattttccacgagtttgttttggagctgaagagtctggcatgtg 9283923  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 26575308 - 26575368
Alignment:
Q  103 gattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataag 163  Q
    ||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||    
T  26575308 gattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccgtgaacgcataag 26575368  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 37462927 - 37462993
Alignment:
Q  97 ccaagcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataag 163  Q
    ||||| ||||||||||||||||||||| |||| ||||| |||||||||||| |||||||||||||||    
T  37462927 ccaagagattctgaggagtttgtaatcgccggttaaagaatcaaaaccgaagccgtgaacgcataag 37462993  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 37462853 - 37462897
Alignment:
Q  20 attttccaagagtttgttttagagttgaagagtctgacatgtgga 64  Q
    |||||||| ||||||||||| ||| |||||||||| |||||||||    
T  37462853 attttccacgagtttgttttggagctgaagagtctcacatgtgga 37462897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 4912 - 4981
Alignment:
Q  97 ccaagcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataaggag 166  Q
    ||||| || |||||||| ||||||||| |||| |||||||||||||||||| ||||||||||||||||||    
T  4912 ccaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcataaggag 4981  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 41966424 - 41966362
Alignment:
Q  97 ccaagcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgca 159  Q
    ||||| ||||||||||||||||| ||| | || ||| |||||||||||||| |||||||||||    
T  41966424 ccaagagattctgaggagtttgtgatcgctggttaatggatcaaaaccgaatccgtgaacgca 41966362  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 29467489 - 29467429
Alignment:
Q  98 caagcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgca 159  Q
    |||| ||||||||| |||||||||||| ||| ||| |||||||||||||| |||||||||||    
T  29467489 caagagattctgag-agtttgtaatcatcggttaatggatcaaaaccgaagccgtgaacgca 29467429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 29423703 - 29423759
Alignment:
Q  103 gattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgca 159  Q
    |||| ||||||||||||||||| | | ||| |||||||||||||| |||| ||||||    
T  29423703 gattgtgaggagtttgtaatcatcagttaatggatcaaaaccgaagccgtaaacgca 29423759  T

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