View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_high_38 (Length: 231)
Name: NF9290_high_38
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 9278454 - 9278261
Alignment:
| Q |
17 |
taatactagtaagagtagtagtgtgcactctattgtgacaaccaaagtgctttgcatatttcttctaatccagttttccatgagcgtaccaaacacctat |
116 |
Q |
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| T |
9278454 |
taatactagtaagagtagtagtgtgcactctattgtgacaaccaaagtgctttgcatatttcttctaatccagttttccatgagcgtaccaaacacctat |
9278355 |
T |
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| Q |
117 |
acattgattaccacttggtgcgtgagaaaattcaggctcgagtcatgcatttgctccctatcacctcgtaacatcagacagctgatgtctttac |
210 |
Q |
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| T |
9278354 |
acattgattaccacttggtgcgtgagaaaattcaggctcgagtcatgcatttgctccctatcacctcgtaacatcagacagctgatgtctttac |
9278261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 26621211 - 26621326
Alignment:
| Q |
95 |
catgagcgtaccaaacacctatacattgattaccacttggtgcgtgagaaaattcaggctcgagtcatgcatttgctccctatcacctcgtaacatcaga |
194 |
Q |
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||||||| ||||||||||||| ||||||| | | |||| ||||||||||| ||||||||| ||||||||| ||||||||| |||||||| |||| |||| |
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| T |
26621211 |
catgagcataccaaacacctagacattgactccaacttagtgcgtgagaagattcaggctggagtcatgcgtttgctccccatcacctctcaacaccaga |
26621310 |
T |
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| Q |
195 |
cagctgatgtctttac |
210 |
Q |
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| T |
26621311 |
caactgatgtttttac |
26621326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 26727190 - 26727305
Alignment:
| Q |
95 |
catgagcgtaccaaacacctatacattgattaccacttggtgcgtgagaaaattcaggctcgagtcatgcatttgctccctatcacctcgtaacatcaga |
194 |
Q |
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| T |
26727190 |
catgagcataccaaacacctagacattgactccaacttagtgcgtgagaagattcaggctggagtcatgcgtttgctccccatcacctctcaacaccaga |
26727289 |
T |
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| Q |
195 |
cagctgatgtctttac |
210 |
Q |
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| T |
26727290 |
caactgatgtttttac |
26727305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 125
Target Start/End: Original strand, 20605619 - 20605697
Alignment:
| Q |
47 |
tattgtgacaaccaaagtgctttgcatatttcttctaatccagttttccatgagcgtaccaaacacctatacattgatt |
125 |
Q |
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| T |
20605619 |
tattgtgacaattaaagtgctttgcatatttcagctaatcctgtgtttcatgagcgtaccaaacatctagatattgatt |
20605697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 9281502 - 9281558
Alignment:
| Q |
44 |
ctctattgtgacaaccaaagtgctttgcatatttcttctaatccagttttccatgag |
100 |
Q |
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|||||||||||||| ||||||||| | |||||| |||||||||| ||||| |||||| |
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| T |
9281502 |
ctctattgtgacaatcaaagtgctatacatattgcttctaatcctgtttttcatgag |
9281558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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