View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_high_40 (Length: 230)
Name: NF9290_high_40
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_high_40 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 909081 - 908870
Alignment:
| Q |
1 |
atctgtaagtttggagataaaagaatgtcaattgctaatatatttgtgattacataaaatccagtacattgtaaaagcatagaaatgcatacacaaagaa |
100 |
Q |
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| T |
909081 |
atctgtaagtttggagataaaagaatgtcaattgctaatatatttgtgattacataaaatccagtacattgtaaaagcatagaaatgcatacacaaagaa |
908982 |
T |
|
| Q |
101 |
atcttaccaggattagttggatgagaagaaatagatttcacacttcctgtgtgccctgttaacactccaagacacttcttttcttgaacatcccataccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
908981 |
atcttaccaggattagttggatgagaagaaatagatttcacacttcctgtgtgccctgttaacactccaagacacttcttttcttgaacatcccataccc |
908882 |
T |
|
| Q |
201 |
taacctgtaaat |
212 |
Q |
| |
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|||||||||||| |
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| T |
908881 |
taacctgtaaat |
908870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 662859 - 663067
Alignment:
| Q |
1 |
atctgtaagtttggagataaaagaa-tgtcaattgctaatatatttgtgattacataaaatccagtacattgtaaaagcatagaaatgcatacacaaaga |
99 |
Q |
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||||| |||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||| |
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| T |
662859 |
atctgcaagtttggagataaaaaaaatgtcaattactaatatatttgtgattacataaaatccagtgcattgtagaagcatagaaatgtatacacaaaga |
662958 |
T |
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| Q |
100 |
aatcttaccaggattagttggatgagaagaaatagatttcacacttcctgtgtgccctgttaacactccaagacacttcttttcttgaacatcccatacc |
199 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
662959 |
aatcttaccgggattagttggatgagaagaaatagatttcacacttcctgtgtgccctgttaacactccaagacacttcttttcttgaacatcccatacc |
663058 |
T |
|
| Q |
200 |
ctaacctgt |
208 |
Q |
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|||||||| |
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|
| T |
663059 |
ttaacctgt |
663067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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