View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_high_6 (Length: 408)
Name: NF9290_high_6
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 65 - 387
Target Start/End: Original strand, 30002850 - 30003172
Alignment:
| Q |
65 |
cattttacttttaaattataaaaactattttaatttttgtggttaaattgctaaagaaaaatgctgaccattcaaagaaggcagtgacatgtgggataca |
164 |
Q |
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| T |
30002850 |
cattttatttttaaattatagaaacgattttactttttgtggttaaattgctaaagaaaaatgctgaccattcaaagaaggcagtgacatgtgggatgca |
30002949 |
T |
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| Q |
165 |
tatatatgattgattagttgcttcctctcattataatattgattgtttccctatagggagttggttcaatgctctaaaatccaatgaaaattataaaacc |
264 |
Q |
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| T |
30002950 |
tatatatgattgattagttgcttcctctcaatataatattgattgtttccctatagggagttggttcaatgctctaaaatccaatgaaaattataaaacc |
30003049 |
T |
|
| Q |
265 |
atttgtttggtaaaaggaagatgagtggaaagcactcaatattagttggagaactctttttatttacaatttattttaatgcctacatataaaccaaaga |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30003050 |
atttgtttggtaaaaggaagatgagtggaaagcactcaatattggttggagaactctctttatttacaatttattttaatgcctacatataaaccaaaga |
30003149 |
T |
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| Q |
365 |
taatagtgccaaaatttttgtta |
387 |
Q |
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||||||||||||||||| ||||| |
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| T |
30003150 |
taatagtgccaaaatttctgtta |
30003172 |
T |
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