View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_low_105 (Length: 230)
Name: NF9290_low_105
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_low_105 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 43416869 - 43416673
Alignment:
| Q |
15 |
tggtgttggtttgggaccttggagtgcgcttttcctcaagatctcaaattcgattctctggagacatggttagtccgattggtgtttgtgatacatagtg |
114 |
Q |
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| T |
43416869 |
tggtgttggtttgggaacttggagtgcgctcttcctcaacatctcaagttcgattctctggagacatggttagtccgattggtgtttgtgatacatagtg |
43416770 |
T |
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| Q |
115 |
tgggagagggttagttaagctgtgcttcagatataatactctattgtcttgtcacttcagtatggcagcataagaattaggaataaaggaaagaatg |
211 |
Q |
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| T |
43416769 |
tgggagagggttagttaagctgtgcttcagatataatactctattgtcttgtcacttcagcatggcagcataagaattaggaataaaggaaagaatg |
43416673 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 32992636 - 32992690
Alignment:
| Q |
18 |
tgttggtttgggaccttggagtgcgcttttcctcaagatctcaaattcgattctc |
72 |
Q |
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| T |
32992636 |
tgttggcttgggaccttggagtgtgctcctcctcaaggtctcaagttcgattctc |
32992690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 53475596 - 53475539
Alignment:
| Q |
15 |
tggtgttggtttgggaccttggagtgcgcttttcctcaagatctcaaattcgattctc |
72 |
Q |
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| T |
53475596 |
tggtgttggtttgggaccttggagtgtgatcttcctcaaagtttcagattcgattctc |
53475539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 32651493 - 32651435
Alignment:
| Q |
15 |
tggtgttggtttgggaccttggagtgcgcttttcctcaagatctcaaattcgattctct |
73 |
Q |
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| T |
32651493 |
tggtattggcttgggacctgggagtgtgctcctcctcaagatctcagattcgattctct |
32651435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 3055015 - 3055060
Alignment:
| Q |
15 |
tggtgttggtttgggaccttggagtgcgcttttcctcaagatctca |
60 |
Q |
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| T |
3055015 |
tggtgttggcttgggaccttggagcgtgcttctcctcaagatctca |
3055060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 5166449 - 5166506
Alignment:
| Q |
15 |
tggtgttggtttgggaccttggagtgcgcttttcctcaagatctcaaattcgattctc |
72 |
Q |
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| T |
5166449 |
tggtgttgatttgagaccttggagtgtgctgctcctcaagatctcaggttcgattctc |
5166506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 31605903 - 31605846
Alignment:
| Q |
15 |
tggtgttggtttgggaccttggagtgcgcttttcctcaagatctcaaattcgattctc |
72 |
Q |
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| T |
31605903 |
tggtgttggcttgggaccttgaagtgtgctcctcctcaaggtctcaagttcgattctc |
31605846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 9570664 - 9570716
Alignment:
| Q |
15 |
tggtgttggtttgggaccttggagtgcgcttttcctcaagatctcaaattcga |
67 |
Q |
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| T |
9570664 |
tggtgttggcttgagaccttggagtgtgctcttcctcaaggtctcagattcga |
9570716 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 18897187 - 18897243
Alignment:
| Q |
15 |
tggtgttggtttgggaccttggagtgcgcttttcctcaagatctcaaattcgattct |
71 |
Q |
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|||||||||||||||||||| ||||| ||| |||||||| ||||| ||||||||| |
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| T |
18897187 |
tggtgttggtttgggaccttagagtgtgctcctcctcaaggtctcatgttcgattct |
18897243 |
T |
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