View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_low_109 (Length: 229)
Name: NF9290_low_109
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_low_109 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 26 - 229
Target Start/End: Complemental strand, 15976880 - 15976677
Alignment:
| Q |
26 |
ataaataaaaatttgtataattgaatatttgaatattttaaaagaatatttgtcggagaaggttatggaaacacatctgctggttactcatcatcgcaac |
125 |
Q |
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| T |
15976880 |
ataaataaaattttgtataattcaatatttgtagagtttaaaagaatatttgtcggagaaggatatggaaacacatctgctggtttctcatcatcacaac |
15976781 |
T |
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| Q |
126 |
ctccttgatatgtttgaaaaatttggatgtaagtttacatgtttttatatccatttttctacggtttgaaagaatttagtttattttcaatattgtctaa |
225 |
Q |
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| T |
15976780 |
ctcctggatatgtttgaaaaatttggatgtaagtttacatgtttttatgtccatttttcaacggtttgaaagaatttaatttattttcaatatggtctaa |
15976681 |
T |
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| Q |
226 |
tagt |
229 |
Q |
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|||| |
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| T |
15976680 |
tagt |
15976677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 227
Target Start/End: Complemental strand, 22896047 - 22895921
Alignment:
| Q |
102 |
ctgctggttactcatcatcgcaacctccttgatatgtttgaaaaatttggatgtaagtttacatgtttttatatccat-ttttctacggtttgaaagaat |
200 |
Q |
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| T |
22896047 |
ctgctggttgctcatcatcacaaccacctgactgtgtatgatgaatttggatgtaagtttacatatttttatgttaatcttttttacagtttgaaacaat |
22895948 |
T |
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| Q |
201 |
ttagtttattttcaatattgtctaata |
227 |
Q |
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| T |
22895947 |
ttaatttttgttcaatattgtctaata |
22895921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 227
Target Start/End: Original strand, 14429017 - 14429140
Alignment:
| Q |
103 |
tgctggttactcatcatcgcaacctccttgatatgtttgaaaaatttggatgtaagtttacatgtttttatatccatttttctacggtttgaaagaattt |
202 |
Q |
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| T |
14429017 |
tgctggttgttcatcatcacagccacctggctatgtttgataaatttagatgtaagtttacatg-ttttattttcatctttttacagtttgaaacaattt |
14429115 |
T |
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| Q |
203 |
agtttattttcaatattgtctaata |
227 |
Q |
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| T |
14429116 |
agtttttgttcaatattgtctaata |
14429140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 102 - 227
Target Start/End: Complemental strand, 16298551 - 16298425
Alignment:
| Q |
102 |
ctgctggttactcatcatcgcaacctccttgatatgtttgaaaaatttggatgtaagtttacatgtttttatatccat-ttttctacggtttgaaagaat |
200 |
Q |
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||||||||| ||||||||| || || ||| | | ||| ||| ||||||||||||||||||||| ||||||| | ||| |||| |||||||||||| ||| |
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| T |
16298551 |
ctgctggttgctcatcatcacagccacctggctgtgtatgatgaatttggatgtaagtttacatatttttatgttcatcttttttacggtttgaaacaat |
16298452 |
T |
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| Q |
201 |
ttagtttattttcaatattgtctaata |
227 |
Q |
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||| ||| | ||||||||||||||||| |
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| T |
16298451 |
ttaatttttgttcaatattgtctaata |
16298425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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