View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9290_low_12 (Length: 460)
Name: NF9290_low_12
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 299 - 365
Target Start/End: Complemental strand, 20659474 - 20659408
Alignment:
| Q |
299 |
ttctttttcctatgtatgctattttatatgcaactatttgagttttatgaatttcgtataatcctat |
365 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20659474 |
ttctttttcctacttatgctattttatatgcatatatttgagttttatgaatttcgtataatcctat |
20659408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 313 - 423
Target Start/End: Original strand, 2539003 - 2539116
Alignment:
| Q |
313 |
tatgctattttatatgcaactatttgagttttatgaatttcgtataatcct---attaatgtaaggattctatgatttgcgactttacctccacttacga |
409 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||| |||||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||| |
|
|
| T |
2539003 |
tatgctatttaatatgcatatatttgagttttatgaattgtgtataatcctatgattaatgtaatgattctaggatttacgactttacttccccttactg |
2539102 |
T |
|
| Q |
410 |
attatacgtgaaat |
423 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
2539103 |
attatacgtaaaat |
2539116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 30526134 - 30526089
Alignment:
| Q |
316 |
gctattttatatgcaactatttgagttttatgaatttcgtataatc |
361 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
30526134 |
gctattttatatgcatatatttgagatttatgaattttgtataatc |
30526089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 313 - 387
Target Start/End: Original strand, 15330125 - 15330202
Alignment:
| Q |
313 |
tatgctattttatatgcaactatttgagttttatgaatttcgtataatcct---attaatgtaaggattctatgattt |
387 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||| ||||||| ||||| |
|
|
| T |
15330125 |
tatgctattttatatgcatatatttgagttttatgaattttgtataatcctacgattaatgtaacgattctacgattt |
15330202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 50314067 - 50313945
Alignment:
| Q |
21 |
aatcgggattttaatcgtataatcctacaattttacaattaatgt-gccttgaacgatcatgactacacctagaatcctaaattagtgaaatcctgtata |
119 |
Q |
| |
|
||||||||||||||| |||| ||| ||| | | ||| |||| || ||| |||| ||||| |||||| || ||||| ||| ||||||||||| |||||| |
|
|
| T |
50314067 |
aatcgggattttaattgtatgatcgtacgactgtacgattatcgtagccctgaaggatcacgactacgcccagaattgtaatttagtgaaatcgtgtata |
50313968 |
T |
|
| Q |
120 |
atcacttccgttaatcgtaaaat |
142 |
Q |
| |
|
|||| ||| |||||||||||||| |
|
|
| T |
50313967 |
atcaattctgttaatcgtaaaat |
50313945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 439
Target Start/End: Complemental strand, 39255318 - 39255199
Alignment:
| Q |
323 |
tatatgcaactatttgagttttatgaatttcgtataatccta---ttaatgtaaggattctatgatttgcgactttacctccacttacgaattatacgtg |
419 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||||||||| ||||||||| ||||||||||||| ||| ||||| || ||||| |||||| || |
|
|
| T |
39255318 |
tatatgcatatacttgagttttatgaattttctataatcctacgattaatgtaacgattctatgatttacgattttactcccccttaccgattataagta |
39255219 |
T |
|
| Q |
420 |
aaattccaattttgactacc |
439 |
Q |
| |
|
|||| || |||||||||||| |
|
|
| T |
39255218 |
aaatcccgattttgactacc |
39255199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University