View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9290_low_14 (Length: 437)
Name: NF9290_low_14
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9290_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 10 - 419
Target Start/End: Original strand, 36355298 - 36355710
Alignment:
| Q |
10 |
gtgttcgcggttgagaagagcaaagacttagattttctgttatttgtaatatgggaatcttatgataacagatggctaaatgaaatataagcagaactat |
109 |
Q |
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| T |
36355298 |
gtgttcgcggttgagaagagcaaagacttagattttctgttatttgtaatatgggaatcttatgataacagatggctaaatgaaatataagcagaactat |
36355397 |
T |
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| Q |
110 |
gtgtagggggatttatttaacaacttcccttcaaaactatgtagtggctttgtatctatctat----tgtgaaagcttctatgacctatttagcttgtct |
205 |
Q |
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| T |
36355398 |
gtgtagggg-atttatttaacaacttcccttcaaaactatgtagtggctttgtatctatctatatattgtgaaagcttctatgacctatttagcttgtct |
36355496 |
T |
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| Q |
206 |
accaagacattgagtatggagattacacattggcatgtatcgaccttattctactttccatatttccaaatttacaatatcaattttactaattaattgc |
305 |
Q |
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| T |
36355497 |
accaagacattgagtatggagattacacattggcatgtatcaaccttattctactttccatatttccaaatttacaatatcaattttactaattaattgc |
36355596 |
T |
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| Q |
306 |
aatctcaattgactctagtatatgattatcagaggcttccatcttcttacatgagcagataaatatagacaagagagatccatcttgtttacaatttaac |
405 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36355597 |
aatctcaattgactttagtatatgattatcagaggcttccatcttcttacatgagcagataaatatagacaagagagatccatcttgtttacaatttaac |
36355696 |
T |
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| Q |
406 |
aagacgaccgatat |
419 |
Q |
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| T |
36355697 |
aagacgaccgatat |
36355710 |
T |
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