View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9290_low_15 (Length: 432)

Name: NF9290_low_15
Description: NF9290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9290_low_15
NF9290_low_15
[»] chr5 (3 HSPs)
chr5 (136-426)||(32026378-32026668)
chr5 (1-137)||(32026190-32026329)
chr5 (342-383)||(41484312-41484353)
[»] chr1 (3 HSPs)
chr1 (136-394)||(29451510-29451762)
chr1 (273-376)||(35306231-35306335)
chr1 (340-405)||(16300175-16300240)
[»] chr4 (3 HSPs)
chr4 (311-378)||(26829389-26829457)
chr4 (324-378)||(34494467-34494522)
chr4 (341-377)||(12567036-12567072)
[»] chr2 (4 HSPs)
chr2 (273-377)||(7444446-7444549)
chr2 (340-378)||(13016794-13016832)
chr2 (340-378)||(33406638-33406676)
chr2 (267-377)||(8856010-8856122)
[»] chr3 (2 HSPs)
chr3 (273-399)||(35231224-35231351)
chr3 (348-408)||(25909546-25909606)
[»] chr7 (1 HSPs)
chr7 (275-378)||(23416343-23416447)


Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 136 - 426
Target Start/End: Original strand, 32026378 - 32026668
Alignment:
Q  136 tatagtttcagaaaatgtaacttcaaccacttgctattataattatatgnnnnnnnggtacaatagttatgtgttttctaatcattttaatagaatataa 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  32026378 tatagtttcagaaaatgtaacttcaaccacttgctattataattatatgtttttttggtacaatagttatgtgttttctaatcattttaatagaatataa 32026477  T
Q  236 atgctttacttttatatattagtattttaaattaaagaagggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaacaatga 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32026478 atgctttacttttatatattagtattttaaattaaagaagggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaataatga 32026577  T
Q  336 aacataaatttgttccgctccatcataaaatatccaaacaatgaaatgagctatctattccatttcattccataatgttcctctctgctcc 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  32026578 aacataaatttgttccgctccatcataaaatatccaaacaatgaaatgagctatctattccatttcattccataatgttcctttatgctcc 32026668  T

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Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 32026190 - 32026329
Alignment:
Q  1 aatttatcaatcgtaaaaacataacagttctcgtagtgattaattacttgcttgcgttattttttatttaaagaaaatagcttgctgcactttttgttgg 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32026190 aatttatcaatcgtaaaagcataacagttctcgtagtgattaattacttgcttgcgttattttttatttaaagaaaatagcttgctgcacttttt-ttgg 32026288  T
Q  101 tca----tcattaactttttaatacctgttattaataatta 137  Q
    |||    |  |  ||||||||||||||||||||||||||||    
T  32026289 tcaagcttgctgcactttttaatacctgttattaataatta 32026329  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 383
Target Start/End: Original strand, 41484312 - 41484353
Alignment:
Q  342 aatttgttccgctccatcataaaatatccaaacaatgaaatg 383  Q
    ||||||||||| |||||| |||||||||||||||||||||||    
T  41484312 aatttgttccgttccatcgtaaaatatccaaacaatgaaatg 41484353  T

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Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 136 - 394
Target Start/End: Original strand, 29451510 - 29451762
Alignment:
Q  136 tatagtttcagaaaatgtaacttcaaccacttgctattataattatatgnnnnnnnggtacaatagttatgtgttttctaatcattttaatagaatataa 235  Q
    ||||| || |||||||||||||||||||||||| |||||||||||||||         ||||||| |||| |||||||||||||||| || | |||||||    
T  29451510 tatagctttagaaaatgtaacttcaaccacttgttattataattatatgtttttct--tacaataattatatgttttctaatcatttaaaaaaaatataa 29451607  T
Q  236 atgctttacttttatatattagtattttaaattaaagaagggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaacaat-g 334  Q
    |||||||  ||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||| || ||||     |||| |||||||| ||| |    
T  29451608 atgctttgattttatataatagtattttaaattaaagaaaggtaaaattggaataaaaaatttatgactcagttca-----tcaacaatccaaataatgg 29451702  T
Q  335 aaacataaatttgttccgctccatcataaaatatccaaacaatgaaatgagctatctatt 394  Q
    ||  ||||||||||||||||  |||||||||||||||||||||| |||||||||| ||||    
T  29451703 aatgataaatttgttccgctgaatcataaaatatccaaacaatggaatgagctatttatt 29451762  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 376
Target Start/End: Complemental strand, 35306335 - 35306231
Alignment:
Q  273 aagggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaacaat-gaaacataaatttgttccgctccatcataaaatatcca 371  Q
    ||||||||| ||||||||||||| |||| || |||| ||||||||||||  |||||||||| |||  | || | | |||||||||||||||| ||| |||    
T  35306335 aagggtaaaattggaataaaaaaattataactcattccattccgtcaattttccaaacaatggaatgagaattctattccgctccatcataatataccca 35306236  T
Q  372 aacaa 376  Q
    |||||    
T  35306235 aacaa 35306231  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 16300240 - 16300175
Alignment:
Q  340 taaatttgttccgctccatcataaaatatccaaacaatgaaatgagctatctattccatttcattc 405  Q
    ||||||| ||||||||||||||| ||||||||||||||| |||   || |||| ||||||||||||    
T  16300240 taaatttattccgctccatcatataatatccaaacaatggaattgactgtctactccatttcattc 16300175  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 378
Target Start/End: Original strand, 26829389 - 26829457
Alignment:
Q  311 attccgtcaataatccaaacaatg-aaacataaatttgttccgctccatcataaaatatccaaacaatg 378  Q
    ||||||| |||  ||||||||||| |||  |||||||||||||||||||||||||||| ||||||||||    
T  26829389 attccgttaattttccaaacaatggaaaggtaaatttgttccgctccatcataaaatacccaaacaatg 26829457  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 378
Target Start/End: Complemental strand, 34494522 - 34494467
Alignment:
Q  324 tccaaacaatg-aaacataaatttgttccgctccatcataaaatatccaaacaatg 378  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||  |||||||||    
T  34494522 tccaaacaatggaaaggtaaatttgttccgctccatcataaaatactcaaacaatg 34494467  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 377
Target Start/End: Original strand, 12567036 - 12567072
Alignment:
Q  341 aaatttgttccgctccatcataaaatatccaaacaat 377  Q
    |||| |||||||||||||||||||||| |||||||||    
T  12567036 aaatctgttccgctccatcataaaatacccaaacaat 12567072  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 377
Target Start/End: Complemental strand, 7444549 - 7444446
Alignment:
Q  273 aagggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaacaatgaaacataaatttgttccgctccatcataaaatatccaa 372  Q
    ||||||||| |||||||||||||||||| || | || | || |||||||  |||||||||||||  | ||||  |||||| ||||||||||| |||||||    
T  7444549 aagggtaaaattggaataaaaaatttataactcgttccgtttcgtcaatt-tccaaacaatgaataaaaaataagttccgttccatcataaagtatccaa 7444451  T
Q  373 acaat 377  Q
    |||||    
T  7444450 acaat 7444446  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 13016794 - 13016832
Alignment:
Q  340 taaatttgttccgctccatcataaaatatccaaacaatg 378  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  13016794 taaatttgttccgctccatcataaaatactcaaacaatg 13016832  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 33406676 - 33406638
Alignment:
Q  340 taaatttgttccgctccatcataaaatatccaaacaatg 378  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  33406676 taaatatgttctgctccatcataaaatatccaaacaatg 33406638  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 377
Target Start/End: Original strand, 8856010 - 8856122
Alignment:
Q  267 ttaaagaagggtaaatttggaataaaaaatttatgacccatttcattccgt-caataatccaaacaatgaaacata-aatttgttccgctccatcataaa 364  Q
    ||||| |||||||||  || ||||||||| |||| || |||| |||||||| || |  ||||||||||| ||||   ||||||||||||||| ||||| |    
T  8856010 ttaaacaagggtaaaaatgaaataaaaaagttataacacattccattccgttcatttttccaaacaatggaacaagtaatttgttccgctccgtcatata 8856109  T
Q  365 atatccaaacaat 377  Q
    ||| |||||||||    
T  8856110 atacccaaacaat 8856122  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 399
Target Start/End: Complemental strand, 35231351 - 35231224
Alignment:
Q  273 aagggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaacaat-gaaacataaatttgttccgctccatcataaaatatcca 371  Q
    ||||||||| ||||||||||||| |||| || |||| ||||||||||||  |||||||||| |||  | || | | |||||||||||| ||| ||| |||    
T  35231351 aagggtaaaattggaataaaaaaattataactcattccattccgtcaattttccaaacaatggaatgagaattctattccgctccatcgtaatataccca 35231252  T
Q  372 aacaatgaaatgagctatctattccatt 399  Q
    ||||| | | ||| || |||||||||||    
T  35231251 aacaaaggagtgaactctctattccatt 35231224  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 408
Target Start/End: Original strand, 25909546 - 25909606
Alignment:
Q  348 ttccgctccatcataaaatatccaaacaatgaaatgagctatctattccatttcattccat 408  Q
    ||||| |||||||||||||||||||||| || |||||  |||||||||||||  |||||||    
T  25909546 ttccgttccatcataaaatatccaaacagtggaatgaaatatctattccattcgattccat 25909606  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 378
Target Start/End: Complemental strand, 23416447 - 23416343
Alignment:
Q  275 gggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaacaatgaaacata-aatttgttccgctccatcataaaatatccaaa 373  Q
    |||||||  ||||||||||||||||| || |||| ||||||||  ||  ||||||||||| || |   |||||||||||||||||  || |||| |||||    
T  23416447 gggtaaaaatggaataaaaaatttataacacattccattccgttcattttccaaacaatggaataagtaatttgttccgctccattgtataatacccaaa 23416348  T
Q  374 caatg 378  Q
    |||||    
T  23416347 caatg 23416343  T

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